Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0058
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07) 32 0.59
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17) 29 3.1
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4) 29 5.5
SB_30801| Best HMM Match : fn3 (HMM E-Value=0) 29 5.5
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2) 28 7.2
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42) 28 7.2
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 28 9.5
>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
Length = 635
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 105 DSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNAWSTPTSSG 281
DSK E D+ + + V Y+ AV DK S V+ ++ N L+ NNK S PT+ G
Sbjct: 109 DSKDESDVLDMVYVL-YNEAVVCYNP---DKASAVLNHIENVLMVNNKQADTSQPTTQG 163
>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
Length = 355
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 403 QQQRWQTCLRRWQGQ-DESKSQLEVRSSVGEQQGLLQIVNTQ 525
QQQ+WQ R+WQ Q +S+ + + R + Q +QI T+
Sbjct: 301 QQQQWQQQQRQWQQQLQQSQLEQQQRQQEMQLQQQMQIAQTK 342
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/117 (24%), Positives = 43/117 (36%)
Frame = +3
Query: 189 EDKKSEVITNVVNKLIRNNKMNAWSTPTSSGCKAPRIXXXXXXXXXXXXXXPKTTLS*CT 368
EDK E T R + T T+S K P I P TT T
Sbjct: 1417 EDKTREEATTKPTTTTRKTTI---PTTTASETKPPTIRKTTTATTTVPATKPPTTRK-TT 1472
Query: 369 SATVLL*RCAMTATTMADLPTAMARTRRVQKSAGSSFLCGRTTRSTSDCEHSA*SVF 539
+AT R TT A+ PT + RR+ S T+++ ++ + +V+
Sbjct: 1473 TATTTQGRTTRKPTTTAEPPTTVDNLRRISTKIKDSTSRPETSQTQTEAPGHSTAVY 1529
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Frame = +3
Query: 537 FDVCQLKTNPDPKTTWAYGGQQR--------------RKGFKXQLXLGXPAKYGQRTFCF 674
++ C KTNP P+ T Y G R R F G P KYG+ CF
Sbjct: 1498 YESCSGKTNPSPQLTEKYWGTSRFNKIRIDPSSGLIHRDDFTFSFHTGNPVKYGRAGDCF 1557
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 387 KARPSRLYISLMLFSAKISVNSTGKHSRTISLEPCIQS 274
KA+ + F++ +S T H R++S +PC+Q+
Sbjct: 556 KAKSEGFFRHKQSFASAVSSKKTAIHHRSVSEDPCVQT 593
>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 235
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 538 NTDYAECSQSEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQ 386
N D CS ++ LV L ++PA +V + GKS ++ A++ + +
Sbjct: 176 NLDVPTCSLIDLSLVALSINLDVPAGSLVAVVGQVGCGKSTLLSALLGETE 226
>SB_30801| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1027
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 496 QGLLQIVNTQRNQYLTFVS*KQTPTPKPHGLTGVNSVERVLRXNW 630
QG+ + + + + F + P PHG+TG N+ ++ +W
Sbjct: 180 QGVNKFAGIESPELMVFTD-EDVPVVSPHGITGYNTSATSIKLHW 223
>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
Length = 404
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 88 TEPQSPTPNSKTIFTTASSLPITTMP--LKKANRSTRTRRAKSSQ 216
T P PTP K + +++P+T +P K + +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288
>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
Length = 870
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 188 RGQEERSHHKCRKQTHTKQQDERMEYAYQLWMQGSKDIVR 307
+ +R + R+QT + + R+E A WM+ ++ +R
Sbjct: 407 QASRQREQERVRQQTESSELRRRLEEAESGWMESKEECIR 446
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 82 MPTEPQSPTPNSKTIFT-----TASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 246
+PT ++PTP ++ +FT TA +P T + T R + Q+ T TT
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTKRVPTTGQIQATPEMPTT 240
Query: 247 R 249
+
Sbjct: 241 K 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,626,076
Number of Sequences: 59808
Number of extensions: 448951
Number of successful extensions: 1574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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