Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0058
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 531 SVFDVCQLKTNPDPKTTWAYGGQQ 602
           S+F  C    NP P+ TW   G++
Sbjct: 410 SMFLKCVASGNPTPEITWELDGKR 433


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 546 CQLKTNPDPKTTWAYGG 596
           C    NP P+ TWA  G
Sbjct: 443 CSAAGNPTPQVTWALDG 459


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 546 CQLKTNPDPKTTWAYGG 596
           C    NP P+ TWA  G
Sbjct: 443 CSAAGNPTPQVTWALDG 459


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 106 TPNSKTIFTTASSLPITTMPLKKANRSTRT 195
           TP +  I  + +++PIT++P    + ++ T
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 40   KPFKLFCVFSWRLYMPTEPQSP 105
            +P  +F   +   YMP+EP++P
Sbjct: 946  EPLYVFVRSAPNFYMPSEPKAP 967


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 236 TKQQDERMEYAYQLWMQGSKDIVR 307
           TK+Q+  +  A + W++  K IVR
Sbjct: 92  TKKQEMLVRSAIKYWVERHKHIVR 115


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 439 QGQDESKSQLEVRSSVGEQQGLLQIVNTQRNQYL 540
           Q  D+ K+   ++    +QQ L+Q +   ++QYL
Sbjct: 165 QTADKKKASAPLQQLALQQQRLIQQLQITQSQYL 198


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 508 QIVNTQRNQYLTFVS 552
           ++ NTQRN+YL  +S
Sbjct: 366 RVNNTQRNEYLLALS 380


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 564 PDPKTTWAYGGQQRRK 611
           P PKT W  G +  RK
Sbjct: 204 PSPKTPWYKGWKVERK 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,528
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)