Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0057
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    31   0.12 
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.15 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    30   0.35 
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    29   0.82 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.1  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    27   1.9  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   3.3  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   4.4  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   5.8  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    26   5.8  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   5.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.6  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   7.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   7.6  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   7.6  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   7.6  

>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +1

Query: 235 QNKKPRYPRTNTSHSPKFPTRRNTLRPRTSSPRSKLRSSINRST*KP 375
           QN    YP   T+     P +R T  P +SS  S   SSIN ST  P
Sbjct: 406 QNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSP 452


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 94  EVQKRWRSIRDSYTKTYRQGKCLPDQCAPNSKR 192
           EVQK W+S  ++ +K + +GK L   C P  K+
Sbjct: 2   EVQKIWKSFLNAISKVFSKGKKLRCTCFPKRKK 34


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 231 ATEQKTEVSQDKYESFSEVSNSPQHAPPEDVIPKIKTEVIDKP 359
           A+ + TEV +DK +SFS ++N      PE     I    ++ P
Sbjct: 815 ASNENTEVEKDKLDSFSALANPASPKAPEYTFVSIHVPPLNVP 857


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 147 TGEVSAGPVRSEQQKISVPQADVVSIEGATEQKTEVSQDKYESFSEVSNSPQHAPPEDV 323
           T  VSA    S ++  SV  + + S + AT    +  +   ESFS+ S   Q   PEDV
Sbjct: 273 TPSVSAST--SRERSTSVAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQTPIPEDV 329


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 675 NSVSERKLSFGQPSEASKALVPLAR 601
           N +SE ++ FG PS  +  LVP+ R
Sbjct: 707 NEISESEMCFGHPSTYAPLLVPMVR 731


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +3

Query: 138 DLQTGEVSAGP--VRSEQQKISVPQADVVSIEGATEQKTEVSQDKYESFSEVSNSPQHAP 311
           +++T E   G   V+ E       +   V +E   E+ +   +    S S V+  PQ   
Sbjct: 144 EIETVETKPGEPEVKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPK 203

Query: 312 PEDVIP--KIKTEVIDKPLDLKTKAWSP 389
            + VIP  K K+E  +  + L+ ++ SP
Sbjct: 204 IQPVIPEKKEKSEKKESSMTLRKRSVSP 231


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 677 SILSLKESCPSANLQKLRKHLCP 609
           S LS+   CPS +   +R H CP
Sbjct: 349 SHLSVSSDCPSRHSSDIRNHSCP 371


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +1

Query: 178 PNSKRYQYHRQMSFLLRALQNKKPRYPR-TNTSH--SPKFPTRRNT-LRPRTSSPRSKLR 345
           P     +Y ++ S   +   NKKP +PR T  SH  + K+  R    +R +   P S L+
Sbjct: 125 PQESSEKYSKKSSTRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPES-LK 183

Query: 346 SSINRST*KPK 378
              N S   PK
Sbjct: 184 KENNNSDYLPK 194


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 273 SFSEVSNSPQHAPPEDVIPKIKTEVIDKPL 362
           SFS V +  +  PPED +  + T++ID+ L
Sbjct: 90  SFSAVGSLREDIPPEDFV--LPTQIIDRTL 117


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +3

Query: 102 ETMALYPGLVHEDLQTGEVSAGPVRSEQQKISVPQADVVSIEGATEQKTEVSQDKY--ES 275
           E   +Y G    D +     A    +  QKI   +    S+EG+ EQ  +  + K   ES
Sbjct: 73  EFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEFKVQRES 132

Query: 276 FSEVSNSPQHAPPEDVIPKIKT 341
           +S+ +++      +DVI K++T
Sbjct: 133 YSQTASN------DDVIEKLQT 148


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 129 VHEDLQTGEVSAGPVRSE-QQKISVPQADVVSIEGATEQKTEVSQDKYESFSEVSNSPQH 305
           +H++    E     V+SE QQK+SV +  +  +EG    K     DK     EV  +   
Sbjct: 164 LHKNCSEIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILREADKRYLNLEVDTA--- 220

Query: 306 APPED 320
            PPE+
Sbjct: 221 TPPEE 225


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 286 TSENDSYLSWDTSVFCSVAPSIETTSACGTDIFCCSERTGPADTSPVCKSSCTSPG*SAI 107
           TS + SYLS  + V  S +PS  ++S   +     S     + +S    SS +S   S+ 
Sbjct: 203 TSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSST 262

Query: 106 VS 101
            S
Sbjct: 263 AS 264


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 237 EQKTEVSQDKYESFSEVSNSPQHAPPEDVIPKIKTEVIDKPL 362
           E   +    +++ F EVS+ P    P  V  + KT++++ P+
Sbjct: 274 EHFVDPKNKEHDRFDEVSHMPLRLLPRGVQLEGKTDILEMPI 315


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 107 DGALSGTRTRRLTDRGSVCRTSALRTAKDISTTGRCRFY*GRYRTKNR 250
           DGA    R  ++ +  S C +     A   S +    +Y  +YR+KNR
Sbjct: 142 DGAGGNWRITKINENYSECHSYPQALAVPASISDSVIYYGCKYRSKNR 189


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 241 CSVAPSIETTSACGTDIFCCSERTGPADTSPV 146
           C+ +PS ++ +A G + FC    T   D  PV
Sbjct: 69  CAFSPSTKSIAAGGLNNFCVVYDTSVPDADPV 100


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 127 SYTKTYRQGKCLPDQCAPNSKRY 195
           SY+K +R+ KCL     PN  RY
Sbjct: 210 SYSKIFREIKCLAKMDHPNVIRY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,790
Number of Sequences: 5004
Number of extensions: 43614
Number of successful extensions: 204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)