Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0057
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 33 0.21
05_03_0592 + 15909437-15911002 30 2.0
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 29 2.6
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.4
03_05_0519 - 25131614-25134778 29 4.5
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 29 4.5
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 29 4.5
10_01_0265 + 2808271-2809064,2809624-2809807 28 6.0
06_02_0035 + 10816723-10819497,10819964-10820011 28 6.0
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 28 7.9
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 28 7.9
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 192 ISVPQADVVSIEGATEQKT-EVSQDKYESFSEVSNSPQHAPPEDVIPKIKT 341
+S PQ+ A+E+K EV+QD+ +S S +SP P ++P ++T
Sbjct: 119 LSTPQSQFNDSSIASEEKQWEVAQDQQDSDSSADSSPLREPQAPLVPILRT 169
>05_03_0592 + 15909437-15911002
Length = 521
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 337 LILGMTSSGGACCGELETSENDSYLSWDTSVFCSVAPSIETTS 209
L+ G GGACCG S YL W C++A + T +
Sbjct: 372 LLPGRHGGGGACCG--SPSSLADYLRWMFCWSCALAQEVRTAN 412
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 235 QNKKPRYPRTNTSHSPKFPTRRNTLRPRTSSPRSKLRSSINRST 366
++ KPR + + SHSPK T+ PR S +S+ R + ST
Sbjct: 67 EDVKPRVSKGSQSHSPKVTTKSQRQSPR-SGDKSQARKNSPGST 109
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 147 TGEVSAGPVRSEQQKISVPQADVVSIEGATEQKTE 251
TGE SAG E + I VP+ V++E +QK+E
Sbjct: 811 TGETSAGKSSQEDKNI-VPETASVAVEEQVQQKSE 844
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +3
Query: 135 EDLQTGEVSAGPVRSEQQKISVPQADVVSIEGATEQKTEVSQDKYESFSEVSNSPQHAPP 314
E+ + +A +E++K P + + E E+K DK E + SP+
Sbjct: 174 EEKEKAPAAAAASAAEEKKPEAPAEEKKAEEAKKEEKKSAEADKKEEKDDKKKSPEKGKK 233
Query: 315 EDVIPKIKTEVIDK 356
+ PK + + D+
Sbjct: 234 DGEKPKEEGKAKDE 247
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 328 GMTSSGGA--CCGELETSENDSYLSWDTSVFCSVAPSIETTSACGTDIFC 185
G T+S GA C G E + N S+ V + + + +AC +D FC
Sbjct: 327 GCTASSGAGECTGGREPTLNVSWADTPCGVLAAGTSAADCQAACMSDCFC 376
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 99 SETMALYPGLVHEDLQTGEVSAG--PVRSEQQKISVPQADVVSIEGATEQKTEVSQDKYE 272
S+ +L P ++++DL G + P + SV D + E+ T VS E
Sbjct: 252 SDVSSLVPSILNQDLLYGPSRSQDFPTNKNEDMQSVLSLDDGQLSLPVEEATSVSPGFEE 311
Query: 273 SFSEVSNSPQHAPP 314
FS++ N Q +PP
Sbjct: 312 EFSQL-NIRQPSPP 324
>10_01_0265 + 2808271-2809064,2809624-2809807
Length = 325
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -2
Query: 358 GLSMTSVLILGMTSSGGACCGELETSENDSYLSWDTSVFCSVAPSIETTSAC---GTDIF 188
G ++ ++ TS G C +E + D V + P++ SAC G+ +
Sbjct: 146 GYNLPMLVTPSATSGSGKCAATGCVAELNGACPADLRVASASGPAVACRSACEAFGSAEY 205
Query: 187 CCSERTGPADTSPVCKSSCTS 125
CCS G +T C+ S S
Sbjct: 206 CCSGAYGNPNT---CRPSAYS 223
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 187 CCSERTGPADTSPVCKSSCTSP 122
CC T A P C+S C SP
Sbjct: 370 CCGWMTATARPCPACRSDCASP 391
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 252 VSQDKYESFSEVSNSPQHAPPEDVIPKIKTEV 347
+S++ S+SE N P+ P D+I ++K V
Sbjct: 91 ISRNAASSYSENDNRPRETPGRDLIARLKERV 122
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 195 SVPQADVVSIEGATEQKTEVSQDKYESFSEVSNSPQHAPPEDVIPKIKTEVIDK 356
SV +A V +EG +K ++D+ S V + + E+++ K+K V++K
Sbjct: 719 SVTKAYAVFLEGMESEKKGRAKDQRPSKKSVGSPGKSHVSEEILSKLKRIVVNK 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,849
Number of Sequences: 37544
Number of extensions: 299499
Number of successful extensions: 1057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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