Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0056
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   1.3  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.3  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    27   4.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   5.3  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   5.3  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   5.3  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    26   5.3  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   7.0  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.3  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.3  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   9.3  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 275 AIDLLTNDECRLLLEVEDFFN 337
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 408 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 497
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 553 NISEVPERVDPQPPAAVLASSPFG 624
           N++ +P  V P PPA + ASS  G
Sbjct: 221 NLARIPSDVKPVPPAHLSASSTVG 244


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 133 NGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQQ*VRVEGVMGCGHRFAH*R*VPF 309
           +  L G+ S  ++ T+I+ H S   F+RI   K  Q   + E V+  G R      VPF
Sbjct: 275 HNCLGGKKSTIAKPTSIV-HYSFQGFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPF 332


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 125 LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECE*KES 265
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C+ K S
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKAS 220


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 692 ALTRQHHKPFRIPAAVLQWAARSPKGLEARTAA 594
           A T   H P + P+  +QW  +S + LEA   A
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKA 778


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 650 LREFETVYGAVELTHFNTAGRVPPGTREFSXLSEL 754
           LR+F  +YG + L  +N+    P GT ++  +  +
Sbjct: 38  LRQFPDIYGIIFLFKWNSKVDKPDGTMDYDSMDNI 72


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 38  FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 211
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 212 FAFVELNHYNNE 247
           F F E NH +++
Sbjct: 367 FQFQEQNHIHHK 378


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 293 NDECRLLLEVEDFFNDDC 346
           NDECR L +   FF+ +C
Sbjct: 535 NDECRRLKQCNHFFHREC 552


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 149 DKLVHLHKTPTSLDINPSGLLFAFVELNH 235
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 418  WRVETRSVIDFDLRCSARKVFKQITIIIEEILNFEQQTALIVSEQIDGR 272
            W   T+ V     R S RKV + + +  EE    +++ ALI  + +  R
Sbjct: 2143 WSTPTKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIAR 2191


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 278 WPQPMTPSTRTHCCNDLVPRMRIKVQRD*CLMML 177
           WPQP+  S + H  +D  PR  +  + D C   L
Sbjct: 541 WPQPLIQSIQQHGYSD--PRQTLPTRLDSCAAKL 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,794
Number of Sequences: 5004
Number of extensions: 60802
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)