Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0056
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 32 0.45
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 31 1.4
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 3.2
03_06_0529 + 34542317-34542598,34543989-34544148,34544237-34544757 29 3.2
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 29 4.2
06_01_1166 + 9931955-9933406 29 4.2
04_04_0057 + 22410167-22411330 29 4.2
05_03_0373 - 13194723-13195847,13196219-13196809 29 5.5
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 28 7.3
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 28 7.3
02_04_0311 + 21936812-21937861 28 9.7
01_03_0163 + 13346586-13347809 28 9.7
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 281 RWPQPMTPSTRTHCCND 231
R PQP PS RT CCND
Sbjct: 51 RQPQPQAPSVRTICCND 67
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 664 FEFPQQFFSGLRGRQKDLKLEPLPGVVGP 578
F+ FFSG+R ++D+ ++ L G+ GP
Sbjct: 552 FDVSTAFFSGVRASRRDINMKGLDGIQGP 580
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 679 STINRFEFPQQFFSGLRGRQKDLKLEPLPGVV 584
S+ + ++ P + SG R QKDL LEP+P ++
Sbjct: 1697 SSADGYDNPNELDSGERRIQKDLGLEPIPSML 1728
>03_06_0529 + 34542317-34542598,34543989-34544148,34544237-34544757
Length = 320
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +1
Query: 499 EYFPNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFGDLAAH*RTAAGIRNGLWC 678
E P W ++ + S+ + I +P DP PP A A P GD GI G W
Sbjct: 13 ETLPAWRDKYLAYKSLKKLIKNLPPDGDP-PPVAAAAEVPAGDGDGD----GGIALGNWF 67
Query: 679 CRV 687
RV
Sbjct: 68 ARV 70
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = -3
Query: 677 HHKPFRIPAAVLQWAARSPKGLEARTAA--GGCGSTRSGTSEMFSKIEGRSTFSS 519
H P AA A SP A + GGC T S S FS +FSS
Sbjct: 82 HPAPLLAAAAAAAAAVASPHAALALSGGSMGGCSDTSSSYSSSFSSSSSSDSFSS 136
>06_01_1166 + 9931955-9933406
Length = 483
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -3
Query: 650 AVLQWAARS----PKGLEARTAAGGCGSTRSGTSEMFSKIEGRS 531
A WAA S P+G E R AAGG G+ G + S + R+
Sbjct: 317 AAFVWAAGSHTALPEGFEERAAAGGRGTVIRGWAPQLSALRHRA 360
>04_04_0057 + 22410167-22411330
Length = 387
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 514 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSP 618
WLE +V P N+ + P P P AA + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 460 VSEFGGTWFQLRR*WRVETRSVIDFDLRCSAR 365
V+E G + QL+R WR + R ++D D R R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 653 AAVLQWAARSPKGLEARTAAGGCGSTRSGTSEMFSKIEGRSTFSSNQLGKYSLVCIDC 480
+ V+ + +P +T+ G S +SG ++ ++ GR NQ+GK +L DC
Sbjct: 303 SGVVSSSTAAPAAAPEKTSRAGSFSFKSGPPKLELQM-GRKWVVENQVGKKNLAIDDC 359
>01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 617 LLATSQPTEELLREFETVYGAVELTHFNTAGRVPPGTREF 736
L+ PTE+ +R F T AVEL+HF G VP T EF
Sbjct: 1217 LITIWNPTEKQVRPFFTPRKAVELSHF---GEVPL-TSEF 1252
>02_04_0311 + 21936812-21937861
Length = 349
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 514 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFGDLAA 636
WLE V P N+ + P P PPA +SSP AA
Sbjct: 154 WLEGHVTCPLCRANLEKQPA---PSPPAVEFSSSPAAAAAA 191
>01_03_0163 + 13346586-13347809
Length = 407
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 263 SWAAAIDLLTNDECRLLLEVED 328
SW AA+D +T DE R LLE D
Sbjct: 115 SWDAALDGITADEARALLESID 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,678,061
Number of Sequences: 37544
Number of extensions: 430213
Number of successful extensions: 1205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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