Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0056
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)                     29   3.2  
SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   9.9  

>SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)
          Length = 307

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -1

Query: 685 LDSTINRFEFPQQFFSGLRGRQKDLKL-EPLPGVVGPRVQELQKCFRRSKGGQLFPLTSW 509
           L   +NR    ++   G +G QKD+ L E L  VV   V++ ++  R+ K   L  +TS 
Sbjct: 85  LKMALNRLRHEREIEQGKQGEQKDIHLHERLSEVVEEAVRDEKR--RKFKALVLTIVTSL 142

Query: 508 ENILLFAL 485
             +LLF+L
Sbjct: 143 TVMLLFSL 150


>SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 695 NALTRQHHKPFRIPAAVLQWAARSPKGLEARTAAGGCGSTRSGTSEMFSKI-EGRSTFSS 519
           N + R + +  R+  + +      P+GL AR      G+ R+GT    + + E  S +S+
Sbjct: 791 NRINRANKEALRVVRSPVAPGPSEPQGLRARADDAAAGTARAGTPSAHTPVPESNSAWSA 850

Query: 518 NQL 510
           + +
Sbjct: 851 SSV 853


>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 653 REFETVYGAVELTHFNTAGRVPPGTREFSXLSELRSKKH 769
           ++ E  + A EL+H+  + R PP  +  +  SE + K+H
Sbjct: 471 KDHEKAHDATELSHYPASARPPPSAQALNKTSE-QEKEH 508


>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 133 NGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQ 240
           +G  TG  +PS  +TNIIRH     +  +  T  ++
Sbjct: 57  SGITTGTATPSVNSTNIIRHYYWHRYAHVNSTNIIR 92


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 151 QVSPSSQNTNIIRHQSLWT 207
           QVS SS  TN +RH+S+W+
Sbjct: 458 QVSKSSNFTNSLRHKSVWS 476


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,641,705
Number of Sequences: 59808
Number of extensions: 490927
Number of successful extensions: 1094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)