Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0056
         (787 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL133504-2|CAB65844.1|  819|Drosophila melanogaster EG:BACH7M4.2...    31   2.4  
AE014298-395|AAF45778.1| 1529|Drosophila melanogaster CG14045-PA...    31   2.4  
Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subuni...    30   4.1  
AY118612-1|AAM49981.1|  218|Drosophila melanogaster LP10549p pro...    30   4.1  
AE013599-3064|AAF57428.1|  218|Drosophila melanogaster CG30152-P...    30   4.1  
AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-P...    30   4.1  

>AL133504-2|CAB65844.1|  819|Drosophila melanogaster EG:BACH7M4.2
           protein.
          Length = 819

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 659 IPAAVLQWAARSPKGLEARTAAGGCGSTRSGTSEMFSKIEGRSTFSSNQL 510
           +P    +W AR   G E RTA        +G     S+  G STF  N+L
Sbjct: 383 VPVTQSEWQARVKSGTERRTAERLAKLENAGNEAKRSEFLGCSTFPLNEL 432


>AE014298-395|AAF45778.1| 1529|Drosophila melanogaster CG14045-PA
           protein.
          Length = 1529

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 659 IPAAVLQWAARSPKGLEARTAAGGCGSTRSGTSEMFSKIEGRSTFSSNQL 510
           +P    +W AR   G E RTA        +G     S+  G STF  N+L
Sbjct: 386 VPVTQSEWQARVKSGTERRTAERLAKLENAGNEAKRSEFLGCSTFPLNEL 435


>Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subunit
           of RNA polymeraseI (A) protein.
          Length = 1644

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 703 GVKMR*LDSTINRFEFPQQFFSGLRGRQKDLKLEPLPGVVGPRV 572
           GVK+       NR ++ Q  F GL   +KD+KL P P ++ P V
Sbjct: 616 GVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLP-PTILKPAV 658


>AY118612-1|AAM49981.1|  218|Drosophila melanogaster LP10549p
           protein.
          Length = 218

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 596 AGGCGSTRSGTSEMFSKIEGRSTFSSNQLGKYSLVCID 483
           AGG GS+ SGT    + I GRS  +   + K S + +D
Sbjct: 33  AGGTGSSESGTGSSSASISGRSQNADELVRKTSQMSMD 70


>AE013599-3064|AAF57428.1|  218|Drosophila melanogaster CG30152-PA
           protein.
          Length = 218

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 596 AGGCGSTRSGTSEMFSKIEGRSTFSSNQLGKYSLVCID 483
           AGG GS+ SGT    + I GRS  +   + K S + +D
Sbjct: 33  AGGTGSSESGTGSSSASISGRSQNADELVRKTSQMSMD 70


>AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-PA
           protein.
          Length = 1642

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 703 GVKMR*LDSTINRFEFPQQFFSGLRGRQKDLKLEPLPGVVGPRV 572
           GVK+       NR ++ Q  F GL   +KD+KL P P ++ P V
Sbjct: 615 GVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLP-PTILKPAV 657


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,611,775
Number of Sequences: 53049
Number of extensions: 731917
Number of successful extensions: 2229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2229
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)