Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0056
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34575.1 68414.m04297 FAD-binding domain-containing protein s...    29   3.5  
At1g30710.1 68414.m03754 FAD-binding domain-containing protein s...    29   4.6  

>At1g34575.1 68414.m04297 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 764 FLSVTQKAN*IRGFPAGLC 708
           + +V  K+N +RGFPAG+C
Sbjct: 156 YYNVANKSNNLRGFPAGIC 174


>At1g30710.1 68414.m03754 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 531

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 764 FLSVTQKAN*IRGFPAGLC 708
           +  V  K+N +RGFPAG+C
Sbjct: 159 YYGVANKSNDLRGFPAGIC 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,747
Number of Sequences: 28952
Number of extensions: 329478
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)