Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0055
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   0.82 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   3.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   4.4  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   5.8  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   7.7  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    24   7.7  

>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 160 TIERVQRXMLQTIMLLMKKQNSTDVTNFPAGLVMIWN 270
           T+ R     L+ + ++ + QN+ + T+  + LV IWN
Sbjct: 32  TVSRTAVSPLERMKIIFQVQNNKEYTSLTSTLVKIWN 68


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 252 ISDDMELERCYDIYGCFSKAYPWTEHRPDNYFPASVESMAIRYPTFT 392
           +S+  + E C+D +G + K Y     +    FP   +S A  YP F+
Sbjct: 298 VSNLSDFEDCFDQFGVYDKEYEKKIEKTKRNFP-KFQSSA-TYPPFS 342


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 262 IWNWSDVMTSTDVFLKPTRGRSTDPIIISLHLSSQWQYGIQLLLAGT 402
           +W+WS  +   D+        ++     S   + QW Y + + LAGT
Sbjct: 268 VWDWSTTVGFVDLDDYTVYDGASVTSNCSSITNEQWSYNVGVYLAGT 314


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +1

Query: 265 WN-WSDVMTSTDVFLKPTRGRSTDPIIISLHLSSQWQY 375
           WN W  + T    +L  +     +P+    HLS  W Y
Sbjct: 279 WNYWFTISTEEKTWLSQSVDADMNPVFSFEHLSFIWNY 316


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 308 FRKTSVDVITSLQFHIITNPAGKLVTSVEFCFFIKS 201
           FR  SVDVI  L+F+ +   A +++T ++  F  K+
Sbjct: 319 FRDISVDVINHLEFNRV--EAAQVLTDLDVYFTYKT 352


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 169 RVQRXMLQTIMLLMKKQNSTDVTNFPAGLVMIWNWSDVMTST 294
           RVQ   LQ+++  + K++ST     P  ++     SD+  ST
Sbjct: 17  RVQNRWLQSLLDYLAKKHSTGANTTPQLVMQYLVASDIREST 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,754
Number of Sequences: 5004
Number of extensions: 28089
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)