Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0055
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      34   0.050
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.27 
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   1.4  
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_44352| Best HMM Match : Toxin_28 (HMM E-Value=3.1)                  27   5.7  
SB_47617| Best HMM Match : UME (HMM E-Value=1.1)                       27   5.7  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             26   10.0 
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_9822| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   10.0 

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 279 CYDIYGCFSKAYPWT-EHRPDNYFPASVESMAIRY 380
           CYD+YGCFS  +P+  ++ P    PAS+ +  + Y
Sbjct: 44  CYDVYGCFSNDHPFNRKYVPLPESPASIHTQFMLY 78


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 CYDIYGCFSKAYPWTEHRPDNYFPASVESMAIRYPTFTR 395
           CY  YGCFS A P++  RP    PA    +   +  FTR
Sbjct: 41  CYGKYGCFSDASPFS--RPFVPLPAPPSKVGTSFQLFTR 77


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = -2

Query: 387 KLDTVLPLTRQMQGNNYRVCAPSTGRL*KNIRRCHNIAPVPYHH*SCREISDIRRILLLH 208
           KL  V P   Q  G +Y    P T       +    ++  P+    C   S IRR  L  
Sbjct: 87  KLALVQPFFLQKTGKSYANEQPDTRDHDSEAKSAEKLSEKPFKCNEC-SASFIRRSEL-- 143

Query: 207 QEHDGLQHXTLHSFDCXSSLNLFSYTQKEREFQSA 103
            +H  L H T   F C     + S+    +E++ A
Sbjct: 144 -QHHSLIHDTGKQFKCSRDAEIKSFHSYSQEYERA 177


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 252 ISDDMELERCYDIYGCFSKAYPWTEHRPDNYFP 350
           IS  +++++C D +  F    PW + R D   P
Sbjct: 352 ISQPLKMDKCGDGFPVFQTWNPWVQPRQDKILP 384


>SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 31  SGQFRIKLRCCRSRETYTRCDICTCTLKFAFLLCVREQIQ 150
           + Q  I +R  RSR T+  C I  C L   + + + +  Q
Sbjct: 692 TAQGLISIRAYRSRNTFQNCSIVLCGLSLLYAIQLMDHSQ 731


>SB_44352| Best HMM Match : Toxin_28 (HMM E-Value=3.1)
          Length = 250

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 252 ISDDMELERCYDIYGCFSKAYPWTEHRPDNYFP 350
           IS  + +++C D +  F    PW + R D   P
Sbjct: 186 ISQPLNMDKCGDGFPVFQTWNPWVQPRQDKILP 218


>SB_47617| Best HMM Match : UME (HMM E-Value=1.1)
          Length = 228

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 287 VITSLQFHIITNPAGKLVTSVE 222
           ++T+LQ HI+T   G +VT+V+
Sbjct: 195 IVTALQVHIVTALQGHIVTAVQ 216


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 136  VHTKGTRIS-KCTCKCHNVCTF 74
            +  KG  ++ K TC C ++CTF
Sbjct: 5139 IRAKGCSVNNKATCSCPDICTF 5160


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 279 CYDIYGCFSKAYPWTEHRPDNYFPASVESMAIRYPTFTRRN 401
           CY  YGCF    P+  +RP    P   + +   +  FTR N
Sbjct: 457 CYPKYGCFHDNPPF--NRPLVPLPHPPDRVGTNFRLFTRSN 495


>SB_9822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 232 VTNFPAGLVMIWNWSDVMTSTDVFLKPTRGRSTD 333
           +T   AGLV++W W+  +       +  +G STD
Sbjct: 122 LTRVNAGLVILWVWAQAVLKALRLRRRLQGTSTD 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,973
Number of Sequences: 59808
Number of extensions: 231494
Number of successful extensions: 540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)