Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0055
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 127 KGTRISKCTCKCHNVCTFRGTGNSV 53
           K  +ISK T +C + C FRG  N+V
Sbjct: 613 KKEKISKVTAQCLDNCNFRGVCNNV 637


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 249  CREISDIRRILLLHQEHDGLQHXTLHSFDCXSSLNLFSYTQKEREFQSARANVTTC 82
            C E+ D+ +  +L  ++ G  + T  S DC   ++ FS T  ER       N+  C
Sbjct: 1882 CDEVCDVCKANILLCQNSGTCNSTTQSCDC---IDYFSGTYCERNENLCETNLVVC 1934


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 127 KGTRISKCTCKCHNVCTFRGTGNSV 53
           K  +ISK T +C + C FRG  N+V
Sbjct: 613 KKEKISKVTAQCLDNCNFRGVCNNV 637


>U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical
           protein F55A4.5 protein.
          Length = 705

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 174 HSFDCXSSLNLFSYTQKEREFQSARANVTTCVRF 73
           H F+  S  N + YT  + + +SA   V    RF
Sbjct: 56  HKFEADSPTNFYDYTNAKEKEKSAMCRVAEIARF 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,897
Number of Sequences: 27780
Number of extensions: 169356
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)