Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0055
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) ... 28 2.0
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 28 2.0
At2g32990.1 68415.m04043 glycosyl hydrolase family 9 protein sim... 27 3.5
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 27 6.2
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 27 6.2
At2g40920.1 68415.m05050 F-box family protein contains Pfam PF00... 27 6.2
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran... 26 8.2
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 26 8.2
At2g33050.1 68415.m04053 leucine-rich repeat family protein cont... 26 8.2
At1g78995.1 68414.m09211 expressed protein 26 8.2
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 26 8.2
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 26 8.2
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 26 8.2
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 26 8.2
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 26 8.2
>At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1)
identical to delta-8 sphingolipid desaturase GI:3819710
from [Arabidopsis thaliana]; contains Pfam profile
PF00487: Fatty acid desaturase; contains Pfam profile
PF00173: Heme/Steroid binding domain
Length = 449
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 LQTIMLLMKKQNSTD-VTNFPAGLVMIWNWSDVMTS 291
+QT +LL K+ D NF AG+++ W W ++ S
Sbjct: 268 IQTFLLLFSKREVPDRALNF-AGILVFWTWFPLLVS 302
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 187 LQTIMLLMKKQNSTDVTNFPAGLVMIWNWSDVMTS 291
+QT +LL K++ D AG+++ W W ++ S
Sbjct: 268 IQTFLLLFSKRHVPDRALNIAGILVFWTWFPLLVS 302
>At2g32990.1 68415.m04043 glycosyl hydrolase family 9 protein
similar to endo-beta-1,4-glucanase GI:4972236 from
[Fragaria x ananassa]
Length = 525
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 202 LLMKKQNSTDVTNFPAGLVMIWNWSDVM-TSTDVFL 306
+L K N T+V PAGL+ + W+++ ST FL
Sbjct: 331 ILNKNINGTNVQRTPAGLLYVRQWNNMQYVSTASFL 366
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 270 VPYHH*SCREISDIRRILLLH 208
VPY +EI D RRIL+LH
Sbjct: 180 VPYIESKAKEIRDERRILMLH 200
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 270 VPYHH*SCREISDIRRILLLH 208
VPY +EI D RRIL+LH
Sbjct: 180 VPYIESKAKEIRDERRILMLH 200
>At2g40920.1 68415.m05050 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein family,
AtFBX8 (GP:20197464) {Arabidopsis
thaliana}|502017|gb|T20576.1|T20576
Length = 436
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 42 SDQITLLPVPRNVH 83
S+Q+T++PVPR +H
Sbjct: 286 SEQLTIIPVPREIH 299
>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to SP|Q9P804
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 691
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 228 GCH*FPCRISDDMELERCYDIYGCFSKAYPWTEHRPDNYFPASV 359
G H P I D +E +DI C+ K +P P++ P SV
Sbjct: 542 GSHVNPLGIKTDAPMEIIWDIMRCWVKNHPIKPQSPEH--PGSV 583
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 246 CRISDDMEL-ERCYDIYGCFSKAYPWTEHRPDNYFPASVESM 368
C + D +L E CY++ P T P P VES+
Sbjct: 2633 CTVCPDFDLCEACYEVLDADRLPPPHTRDHPMTAIPIEVESL 2674
>At2g33050.1 68415.m04053 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 800
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 304 LKPTRGRSTDPIIISLHLSSQW 369
L P +G+ DP+ + ++L S+W
Sbjct: 765 LGPAKGKQVDPVRLFMNLDSRW 786
>At1g78995.1 68414.m09211 expressed protein
Length = 159
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 127 KGTRISKCTCKCHNVCTFRGTGNSVI 50
K KCT KC N C G G I
Sbjct: 97 KSKNAEKCTVKCVNTCIRSGDGEGPI 122
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 83 HVVTFARAL*NSRSFCVYE 139
H +FA+ + +SR+FCVYE
Sbjct: 459 HESSFAKDIASSRTFCVYE 477
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 83 HVVTFARAL*NSRSFCVYE 139
H +FA+ + +SR+FCVYE
Sbjct: 459 HESSFAKDIASSRTFCVYE 477
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 83 HVVTFARAL*NSRSFCVYE 139
H +FA+ + +SR+FCVYE
Sbjct: 453 HESSFAKDIASSRTFCVYE 471
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 83 HVVTFARAL*NSRSFCVYE 139
H +FA+ + +SR+FCVYE
Sbjct: 439 HESSFAKDIASSRTFCVYE 457
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 83 HVVTFARAL*NSRSFCVYE 139
H +FA+ + +SR+FCVYE
Sbjct: 459 HESSFAKDIASSRTFCVYE 477
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,372,308
Number of Sequences: 28952
Number of extensions: 153058
Number of successful extensions: 341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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