Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0053
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    35   0.062
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   0.77 
07_03_0846 - 21983581-21986055                                         29   2.3  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     29   4.1  
06_01_1170 - 10002650-10004122                                         28   5.4  
06_01_0655 + 4742267-4742531,4743313-4744136                           28   7.1  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    27   9.4  

>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 350 VREEPQFRTFGSCTRPSGRWCEATIRGIMPERS-KAEASLAESGKDMLTVEPRESGXSKQ 174
           +   P     G   RP+    +++IRGI+P+RS KA++SL +  + +L +    S   +Q
Sbjct: 60  ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119

Query: 173 CDFTSRVSHS 144
              T+  S S
Sbjct: 120 VKATTSRSFS 129


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 242 ASLAESGKDMLTVEPRESGXSKQCDFTSRVSHSKRETRRRSPFGS 108
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 100 DLRDPNGLRRRVSRFECETRLVKSHCLEXPDSRGSTVSISLPDSARLASA 249
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 58  GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 174
           G V+  L + TDS++    L +P+GL RRV  F  E+++   H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382


>06_01_1170 - 10002650-10004122
          Length = 490

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 193 SRGSTVSISLPDSARLASALERSGIIPRMVASHHRPL 303
           S GS   +  P +A LA+ALER+ +     A  H PL
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPL 334


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +1

Query: 100 DLRDPN-GLRRRVSRFECETRLVKSHCLEXPDSRGSTVSISLPDSARLASALERSGIIPR 276
           ++RDP  G+R  +  F       +++  E    RG    ++ PD A +AS  +RS   P 
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS--QRSHAEP- 185

Query: 277 MVASHHRPLGRVHE-PNVRNCGSS---RTEQYYY 366
             +S + P   + E P V + G+     T  Y Y
Sbjct: 186 --SSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 572  KSYHRDNWLVAAQAFIATXLFVLRCRLFLSLRSKIRQALD 453
            KSY R+    A + F  T + ++   +FL+L  KI + LD
Sbjct: 1182 KSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLD 1221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,048
Number of Sequences: 37544
Number of extensions: 346961
Number of successful extensions: 912
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)