Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0053
         (636 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   1.5  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   3.5  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -3

Query: 331  FGHLVH-ALGRAAGGAKLPSAGLCLNALRPKP 239
            +  L+H A+G   GG  L   G CL   R  P
Sbjct: 936  YSFLMHTAVGHGGGGQSLSGPGSCLEDFRATP 967


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +1

Query: 124 RRRVSRFECETRLVKSHCLEXPDSRGSTVSISLPDSARLASALERSGIIPRMVASHHR 297
           RRR   +  E    +SHC+E         S    +  R    L RS +  ++ AS  R
Sbjct: 268 RRRAYWWTTEIAQCRSHCIEARRKMNRAKSSEQREDLRRLYILARSNLKRKIKASKRR 325


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,382
Number of Sequences: 2352
Number of extensions: 12065
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)