Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0052
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   1.5  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.7  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.2  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 260 EYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMY 367
           +Y  Q+W  GS+  VR+     + +IL+ NY  L +
Sbjct: 440 KYIIQIWTTGSDPQVRNLLDNGYRVILS-NYDALYF 474


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 227 QSDTKQQDERMEYAYQLWMQGSED 298
           +SD +QQ+   + A + W+ G  D
Sbjct: 224 ESDWQQQNRNADAAIRYWLDGGAD 247


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 252 NAWSTPTSSGCKAPRTSSGIVSR 320
           N +S+P SSG   P + +G + R
Sbjct: 133 NGYSSPMSSGSYDPYSPNGKIGR 155


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 251 HLVVSYQIVYDICDELTLVIGVD*FASFNSRVVISN 144
           H +    ++ D+  EL   IGV  F SF+  V +SN
Sbjct: 32  HFMTPTLLLRDV--ELIKQIGVKEFDSFHDHVSVSN 65


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 592  MVLGPSGTWFPLN 630
            ++ GPS TWF  N
Sbjct: 1138 VIYGPSDTWFDEN 1150


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 258 WSTPTSSGCKAPRTSSGIVS 317
           W TPTSS         G++S
Sbjct: 7   WDTPTSSAPAFSEQRGGVIS 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,233
Number of Sequences: 336
Number of extensions: 3498
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)