Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0052
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    32   0.10 
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    29   0.97 
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   3.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.2  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   6.9  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 135 DVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNAWSTP 269
           ++I+A+     +   +   D++ +L+T ++NN IR+ K+ AW TP
Sbjct: 409 NIIVANVYKKFQSILMKNKDSRSKLMTEIINN-IRSIKLYAWETP 452


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 147 ADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNAWSTPTSSGCKAPRTSSGIVSR 320
           A  +S+   S L+  +N+G  +   +  L+  +K   W+   S   +A R  S  +S+
Sbjct: 39  ASSNSSSSSSLLLPDENEGNEVFGSLKGLVTQSKFGQWANKLSKSLQARRRKSESISK 96


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +3

Query: 150 DYDSAVERSKLIYTDNKGELITN--VVNNLIRNNKMNAWSTPTSSGCK--APRTSSGIVS 317
           ++   +E+ KLI   NK     N   V   I   ++  +     +G +  +P  S   + 
Sbjct: 642 EFADVIEQDKLIEIKNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHID 701

Query: 318 RLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGPVQ 446
            L S++  L      C GE + L+H    A +  G  KT  VQ
Sbjct: 702 LLFSNMKHL--FFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQ 742


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +3

Query: 261 STPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGP 440
           STP S+    P + S   SRLSS L+      S+   ET      +     PTG++  G 
Sbjct: 730 STPLSNSSAYPSSGSSTFSRLSSTLT-----SSIIPTETFGSTSGSATGTRPTGSSSQGS 784

Query: 441 V 443
           V
Sbjct: 785 V 785


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 150 DYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNAWSTPTS 275
           D D   + SKL Y D +G+  TN  N+L  + + +  S P+S
Sbjct: 115 DEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,979
Number of Sequences: 5004
Number of extensions: 58138
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)