Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0052
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0939 + 26131405-26131596,26132753-26133166                       30   2.4  
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732...    29   3.1  
05_06_0168 - 26115947-26116007,26116109-26116398,26116934-261172...    29   5.4  
03_03_0255 + 15894081-15894356,15894565-15894635,15894746-158947...    29   5.4  
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    28   9.5  

>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 336 ISVNSTGKQSRTMSSEPCIQSW*AYSMRSSCCFVSDCL 223
           +S  +  ++ R +S  PC+  W A S R  C + + CL
Sbjct: 43  LSPLAVSRRRRLLSEWPCVAWWKAVSERGDCTYGTTCL 80


>11_03_0177 +
           11269754-11270320,11271701-11272180,11272663-11273292,
           11273377-11273443,11273510-11273620,11273696-11275206
          Length = 1121

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +3

Query: 168 ERSKLIYTDNKGELITNVVNNLIRNNKMNAWSTPTSSGCKAPRTSSGIVSRLS 326
           E++KLI+ D   EL TNV+      ++ N   TP     K PR SS IV ++S
Sbjct: 581 EQTKLIFRDEHNELPTNVIAGPAIPSEKNQ-PTPLEDN-KGPRDSS-IVDKIS 630


>05_06_0168 -
           26115947-26116007,26116109-26116398,26116934-26117234,
           26117333-26117403,26118067-26118174,26118700-26118774,
           26118901-26118959,26119119-26119179,26120979-26120990
          Length = 345

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +2

Query: 329 TLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSRVSWKFIPLWENNKVYFKIEN 508
           ++  ++  V+L+ + DG   T +D  G       D+  +R      P+    +VY+++EN
Sbjct: 63  SIAASQEVVELVDKYDGECVTANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLEN 122

Query: 509 LSANRTWALKVRT 547
              N    +K R+
Sbjct: 123 FYQNHRRYVKSRS 135


>03_03_0255 +
           15894081-15894356,15894565-15894635,15894746-15894774,
           15894865-15895061,15895156-15895368,15895851-15895976,
           15896144-15896260,15896546-15896662,15896776-15896869,
           15897644-15897723
          Length = 439

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 439 QFKSQLEIHSAVGEQQGLLQDREPERKQNLG 531
           Q KSQ  ++S +GE++ + +D E E++   G
Sbjct: 249 QLKSQRSLYSPIGEEEEVTEDEEEEKEITQG 279


>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 317 GNNPGRCPRSLASRAGRRTPCVHLVVSYQIVYD 219
           G +P     SLA+R GR TPC   +  Y+ ++D
Sbjct: 413 GRSPSLNCASLATRLGRITPCRAQIEWYKALFD 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,141,999
Number of Sequences: 37544
Number of extensions: 398022
Number of successful extensions: 1107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)