Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0052
         (772 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   6.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   7.9  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 195 NKGELITNVVNNLIRNNKMNAWSTPTSSGCKAPRTSSGIVSRLSS 329
           N+G   TN  NN   NN  N  +T  S    A  ++S +++  +S
Sbjct: 91  NEGTGKTNNNNNNNNNNGSNTGATVNSGSSNAALSNSSVLNGSNS 135


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 227 QSDTKQQDERMEYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNG 406
           Q   K QD R++ A +      +D+V      +   +LA  + +L+  +  L  T+SD  
Sbjct: 258 QEIQKAQD-RLKNAQKALKDAKKDVVT---AKDEKSVLATEHQQLLREKTKLDLTISDLS 313

Query: 407 GVAYGDSKDR 436
               GD+K +
Sbjct: 314 DEVQGDNKSK 323


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,676
Number of Sequences: 2352
Number of extensions: 15302
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)