Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0051
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P75801 Cluster: Uncharacterized membrane protein yliF; ...   186   4e-46
UniRef50_UPI0000E4608D Cluster: PREDICTED: hypothetical protein;...    39   0.14 
UniRef50_Q5DYQ9 Cluster: Two component response regulator; n=1; ...    35   2.2  
UniRef50_A0CHP0 Cluster: Chromosome undetermined scaffold_183, w...    34   2.9  
UniRef50_Q54GX8 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q55HG2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  

>UniRef50_P75801 Cluster: Uncharacterized membrane protein yliF;
           n=21; Enterobacteriaceae|Rep: Uncharacterized membrane
           protein yliF - Escherichia coli (strain K12)
          Length = 442

 Score =  186 bits (454), Expect = 4e-46
 Identities = 105/151 (69%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
 Frame = +1

Query: 256 LERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPXGLYVF 435
           LERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLP GLYVF
Sbjct: 159 LERFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF 218

Query: 436 AYKKDVYLRVCTLIIFFAALVAVIWVPVASIWYAEXLIV--VLWRKKPSLITILNAYWMA 609
           AYKKDVYLRVCTLIIFFAALVAVI    AS  Y    ++   +  K+  +          
Sbjct: 219 AYKKDVYLRVCTLIIFFAALVAVI--SGASCLYLVRRVINRGIVEKEAIINNHFERVLDG 276

Query: 610 GFSFRLPMFKXLYSMYNSAFLGTT*PKAMGR 702
           G  F     K LYSMYNSAFL     KAMGR
Sbjct: 277 GLFFSAADVKKLYSMYNSAFLDDL-TKAMGR 306



 Score =  182 bits (442), Expect = 1e-44
 Identities = 84/84 (100%), Positives = 84/84 (100%)
 Frame = +2

Query: 2   LLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFI 181
           LLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFI
Sbjct: 74  LLVGLRTAYADSVSPSYLYDVGPYLISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFI 133

Query: 182 SFDGKTFVYYLYPVTHNRSLIFLL 253
           SFDGKTFVYYLYPVTHNRSLIFLL
Sbjct: 134 SFDGKTFVYYLYPVTHNRSLIFLL 157


>UniRef50_UPI0000E4608D Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 769

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +2

Query: 80  SSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLVW 259
           S +  +Q+KE E  +  D++  +K+ H+    F SF  K F  Y YP+ H    IF++ +
Sbjct: 279 SHESHLQLKEAEYAHSLDLIWALKHYHM----FSSF--KLFWTYYYPIIHFLKFIFIIAY 332

Query: 260 SVFLYCQNRWR 292
           S  L+  N W+
Sbjct: 333 SAMLWLPN-WQ 342


>UniRef50_Q5DYQ9 Cluster: Two component response regulator; n=1;
           Vibrio fischeri ES114|Rep: Two component response
           regulator - Vibrio fischeri (strain ATCC 700601 / ES114)
          Length = 572

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = -3

Query: 256 DKQKYQTTIV-SYRIE--VIDEGFTVKRDKPCI-FDMSILHNLHNICTIIFLELLYLNTF 89
           DKQK Q  I+ +Y I   +I+EG   K  +  +    S   NLH + TI+ +EL+YL +F
Sbjct: 354 DKQKAQLNILYNYSISKRLIEEGHISKAKRLILKATTSFYDNLHQLNTIVLIELVYLLSF 413

Query: 88  V 86
           +
Sbjct: 414 L 414


>UniRef50_A0CHP0 Cluster: Chromosome undetermined scaffold_183,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_183,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 355

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 77  ISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLY 217
           +SS E +Q++E E  +   + QV++Y+     G +S DG+  V YL+
Sbjct: 295 LSSKEGVQIRESEGGWTCKLEQVIEYKDYFLFGSMSKDGEYLVSYLF 341


>UniRef50_Q54GX8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 859

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 74  LISSDECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVY-YLYPVTHNRSLIFL 250
           LI++++ I  + F+KNY  +    ++   + N G +SFD   FVY  +     N S+I  
Sbjct: 552 LINNNKSIIFEHFKKNYSLEYYSSIEQLDLVNNGGVSFDVYKFVYDNIDDFISNYSMI-- 609

Query: 251 LVWSV 265
            VWSV
Sbjct: 610 NVWSV 614


>UniRef50_Q55HG2 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 238

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 424 LYVFAYKKDVYLRVCTLIIFFAALVAVI----WVPVASIWYAEXLIVVLW 561
           L+VF     V  +VC L+I  A LV V+    W+  ASI   E +++ LW
Sbjct: 117 LFVFCGFDIVASKVCALVIHIAMLVPVLRADHWIAFASIIACEVIMIGLW 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,509,512
Number of Sequences: 1657284
Number of extensions: 16363577
Number of successful extensions: 47537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47524
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)