Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0051
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   2.0  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   2.0  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   4.5  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    26   4.5  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.0  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   6.0  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 283 SLAMDSENLMF---SLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPXGLYVFAYKKDV 453
           S+   + N +F   S F N  P    +   +   + V+E +  F  L   +    YK   
Sbjct: 177 SITQSTANFIFAEVSTFNNPWPTNDSDVKFRAVQWIVAEVLLVFTILLNQVPPRYYKW-- 234

Query: 454 YLRVCTLIIFFAALVAVIWVPVAS 525
             +   L++F   ++ +IWVPVA+
Sbjct: 235 IFKASMLLMFIDYVMNIIWVPVAT 258


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 439 YKKDVYLRVCTLIIFFAALVAVIWVPVASIWYAEXLIVVLWRKKPSLITILNAY 600
           Y   +YL+ C LI+      AV+ +PVA IW     I++   + P +  +   Y
Sbjct: 166 YNVAIYLQRCLLIL------AVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRY 213


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 507 YHCHQCGKENNQCTNPQ 457
           Y+C+Q G + ++CT PQ
Sbjct: 39  YNCNQTGHKASECTEPQ 55


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 177 LSLLTVKPSSITSIR*LTIVV*YFCLSGAFF 269
           + LLTVKPS       + +VV Y C  G FF
Sbjct: 189 IKLLTVKPSRNAGRDWVLLVVLYECAFGIFF 219


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 158 HVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLVWSVFL 271
           H K T F    G  ++++L+ ++   S  +  +W VF+
Sbjct: 272 HAKQTKFTLTSGHGYLFWLWILSALLSSAYTFLWDVFI 309


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 581 INDGFFLHNTTIXHSAYQIEATGTHITATNAAKKIIN 471
           I +GF + N T   SAY    +  + TAT++  +I++
Sbjct: 515 IPEGFNVSNVTEYSSAYSASLSNYYATATSSVFQIVS 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,960
Number of Sequences: 5004
Number of extensions: 70335
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)