Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0051
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0005 - 8871625-8872616,8872807-8872933,8873466-8874209,887... 29 2.7
11_03_0128 - 10437407-10438049,10438097-10438272 29 3.6
01_03_0138 + 12963464-12965059,12965085-12965660 29 3.6
08_02_0648 - 19694538-19696569,19697151-19697998 29 4.7
02_04_0164 + 20484911-20485147,20486639-20487150,20487311-204873... 28 6.2
02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179... 28 6.2
12_01_0736 + 6582371-6585370 28 8.3
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 28 8.3
03_01_0106 - 839585-839614,839725-840825,840901-841122 28 8.3
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371... 28 8.3
>11_03_0005 -
8871625-8872616,8872807-8872933,8873466-8874209,
8874287-8874328,8874898-8874993,8877589-8877662,
8877681-8878344
Length = 912
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 319 ERTSGSRCPSPAILTVKKNAPD--KQKYQTTIVSYRIEVIDE 200
E SG+RCPSP L D + T + Y+IE IDE
Sbjct: 489 ENRSGTRCPSPVNLIYSGREIDVSNETKTNTPLEYQIEGIDE 530
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 482 SLPHWWQ*YGCQLPLSGTQSX*SWYCGERSHH**PF*TRTGWRAFXFGCRC 634
S W C P + ++S SW G RSH P + WR CRC
Sbjct: 222 SASSWCPSSRCPSPTASSESLGSWGSGCRSHLSSPT-CSSWWRTTALACRC 271
>01_03_0138 + 12963464-12965059,12965085-12965660
Length = 723
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 179 ISFDGKTFVYYLYPVTHNRSLIFLLVWSVFL-YCQNRWRWTART*CSLYLR 328
+ FDG YY+ V S++F+ +W + C N WT + Y+R
Sbjct: 378 VIFDGSQAFYYIVTVVLLLSVVFIEIWEIVADVCSN---WTKMALLAHYIR 425
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 334 KPVTGDEYN-AKNAIFTVSEAMEHFAYLPXGLYVFAYKKDVYLRVCTL 474
KP T E+ KN+IF V E + L++ Y YL+VC L
Sbjct: 392 KPATKQEWERVKNSIFCVLERDHEMEVVKRILFLSYYDLPDYLKVCLL 439
>02_04_0164 +
20484911-20485147,20486639-20487150,20487311-20487399,
20487586-20487770,20487856-20487894,20488000-20488038
Length = 366
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 135 LCRL*SIDMSKIQGLSLLTVKPSSITS 215
LCRL ++D S ++ SL+TVK S TS
Sbjct: 234 LCRLRAVDTSLLKCYSLMTVKEWSTTS 260
>02_01_0269 +
1788788-1789508,1789629-1789658,1790127-1790368,
1790595-1790803,1791924-1792182
Length = 486
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 128 ADIMQVVKYRHVKNTGFISFDGKTFVY-YLYPVTHNRSLIF 247
AD + + + NTG++++ KTF++ YL +N L+F
Sbjct: 173 ADHRRTLLFHTFSNTGWLAYGNKTFIFRYLLASPNNVLLLF 213
>12_01_0736 + 6582371-6585370
Length = 999
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 141 RL*SIDMSKIQGLSLLTVKPSSITSIR*LTIVV*YFC-LSG 260
+L S+D+ ++ GL L+ PS I+++ LT++ + C LSG
Sbjct: 369 KLKSLDLLEVSGLELVGSMPSWISNLTSLTVLNFFHCGLSG 409
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 498 HQC-GKENNQCTNPQINIFFIRKYIQSXRQIGEVLHRFRNGEDGVFSIIFITG 343
H C G + TN ++ F Y+Q+ QIG+V F + +FSI + G
Sbjct: 61 HACEGDAVTKLTNEKVPYFNAPIYLQNKTQIGKVDEIFGPINESLFSIKMLEG 113
>03_01_0106 - 839585-839614,839725-840825,840901-841122
Length = 450
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 283 ILTVKKNAPDKQKYQTTIVSYRIEVIDEGFTVKRDKPCIFDMSILHNLHNI 131
++ KK PDK Y T I +Y + +DE + + + + D +L ++ +
Sbjct: 397 LMKEKKCKPDKVTYTTMIQAYNVHGMDEAANLLKMEVGMVDGKLLESVSEV 447
>02_01_0513 +
3715406-3715543,3716298-3716708,3716882-3717085,
3717552-3717729,3717833-3717951
Length = 349
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 431 TYNPXGK*AKCSIASETVKMAFLALYSSPVTGLP 330
TY P G C++ E V+ AF+ L +S + LP
Sbjct: 126 TYLPEGTILPCNLPREDVRDAFICLTASSLAELP 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,406,221
Number of Sequences: 37544
Number of extensions: 443744
Number of successful extensions: 1086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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