Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0051
(702 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050038-1|AAH50038.1| 584|Homo sapiens zinc finger protein 677... 31 3.0
BC023569-1|AAH23569.1| 443|Homo sapiens UPF3 regulator of nonse... 31 5.3
AY013250-1|AAG48510.1| 476|Homo sapiens hUPF3A protein. 31 5.3
AL160396-6|CAM22288.1| 443|Homo sapiens UPF3 regulator of nonse... 31 5.3
AL160396-5|CAI15816.1| 476|Homo sapiens UPF3 regulator of nonse... 31 5.3
AF318575-1|AAG60690.1| 452|Homo sapiens UPF3 protein. 31 5.3
AB058774-1|BAB47500.2| 821|Homo sapiens KIAA1871 protein protein. 31 5.3
BC131719-1|AAI31720.1| 465|Homo sapiens zinc finger protein 701... 26 6.8
BC080612-1|AAH80612.2| 465|Homo sapiens zinc finger protein 701... 26 6.8
AK001753-1|BAA91884.1| 465|Homo sapiens protein ( Homo sapiens ... 26 6.8
AY438646-1|AAR14184.1| 475|Homo sapiens zinc finger protein 383... 30 7.0
AK093182-1|BAC04086.1| 475|Homo sapiens protein ( Homo sapiens ... 30 7.0
BC022022-1|AAH22022.2| 628|Homo sapiens zinc finger protein 555... 25 8.6
AK093163-1|BAC04082.1| 543|Homo sapiens protein ( Homo sapiens ... 25 8.7
AK056659-1|BAB71244.1| 440|Homo sapiens protein ( Homo sapiens ... 25 8.9
BC089424-1|AAH89424.2| 425|Homo sapiens zinc finger protein 789... 30 9.2
>BC050038-1|AAH50038.1| 584|Homo sapiens zinc finger protein 677
protein.
Length = 584
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY C++CGK NQC+N
Sbjct: 290 PYKCNECGKAFNQCSN 305
>BC023569-1|AAH23569.1| 443|Homo sapiens UPF3 regulator of nonsense
transcripts homolog A (yeast) protein.
Length = 443
Score = 30.7 bits (66), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 110 TPLPEYIRHWKSDKDRHRTNKRGKPSRRKL 21
TPL EYI++ K +K R R KR + RR+L
Sbjct: 182 TPLLEYIKNRKLEKQRIREEKREERRRREL 211
>AY013250-1|AAG48510.1| 476|Homo sapiens hUPF3A protein.
Length = 476
Score = 30.7 bits (66), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 110 TPLPEYIRHWKSDKDRHRTNKRGKPSRRKL 21
TPL EYI++ K +K R R KR + RR+L
Sbjct: 215 TPLLEYIKNRKLEKQRIREEKREERRRREL 244
>AL160396-6|CAM22288.1| 443|Homo sapiens UPF3 regulator of nonsense
transcripts homolog A (yeast) protein.
Length = 443
Score = 30.7 bits (66), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 110 TPLPEYIRHWKSDKDRHRTNKRGKPSRRKL 21
TPL EYI++ K +K R R KR + RR+L
Sbjct: 182 TPLLEYIKNRKLEKQRIREEKREERRRREL 211
>AL160396-5|CAI15816.1| 476|Homo sapiens UPF3 regulator of nonsense
transcripts homolog A (yeast) protein.
Length = 476
Score = 30.7 bits (66), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 110 TPLPEYIRHWKSDKDRHRTNKRGKPSRRKL 21
TPL EYI++ K +K R R KR + RR+L
Sbjct: 215 TPLLEYIKNRKLEKQRIREEKREERRRREL 244
>AF318575-1|AAG60690.1| 452|Homo sapiens UPF3 protein.
Length = 452
Score = 30.7 bits (66), Expect = 5.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 110 TPLPEYIRHWKSDKDRHRTNKRGKPSRRKL 21
TPL EYI++ K +K R R KR + RR+L
Sbjct: 191 TPLLEYIKNRKLEKQRIREEKREERRRREL 220
>AB058774-1|BAB47500.2| 821|Homo sapiens KIAA1871 protein protein.
Length = 821
Score = 30.7 bits (66), Expect = 5.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY CH+CGK+ NQ +N
Sbjct: 196 PYICHECGKDFNQSSN 211
>BC131719-1|AAI31720.1| 465|Homo sapiens zinc finger protein 701
protein.
Length = 465
Score = 26.2 bits (55), Expect(2) = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY C++CGK NQ +N
Sbjct: 297 PYKCNECGKVFNQQSN 312
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 513 HPYHCHQCGK 484
+PY C++CGK
Sbjct: 268 NPYKCNECGK 277
>BC080612-1|AAH80612.2| 465|Homo sapiens zinc finger protein 701
protein.
Length = 465
Score = 26.2 bits (55), Expect(2) = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY C++CGK NQ +N
Sbjct: 297 PYKCNECGKVFNQQSN 312
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 513 HPYHCHQCGK 484
+PY C++CGK
Sbjct: 268 NPYKCNECGK 277
>AK001753-1|BAA91884.1| 465|Homo sapiens protein ( Homo sapiens
cDNA FLJ10891 fis, clone NT2RP4002078, weakly similar to
ZINC FINGER PROTEIN 91. ).
Length = 465
Score = 26.2 bits (55), Expect(2) = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY C++CGK NQ +N
Sbjct: 297 PYKCNECGKVFNQQSN 312
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 513 HPYHCHQCGK 484
+PY C++CGK
Sbjct: 268 NPYKCNECGK 277
>AY438646-1|AAR14184.1| 475|Homo sapiens zinc finger protein 383
protein.
Length = 475
Score = 30.3 bits (65), Expect = 7.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY C++CGK N+C+N
Sbjct: 421 PYECNECGKAFNKCSN 436
>AK093182-1|BAC04086.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ35863 fis, clone TESTI2007524, moderately
similar to HYPOTHETICAL ZINC FINGER PROTEIN. ).
Length = 475
Score = 30.3 bits (65), Expect = 7.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 510 PYHCHQCGKENNQCTN 463
PY C++CGK N+C+N
Sbjct: 421 PYECNECGKAFNKCSN 436
>BC022022-1|AAH22022.2| 628|Homo sapiens zinc finger protein 555
protein.
Length = 628
Score = 24.6 bits (51), Expect(2) = 8.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 522 GNWHPYHCHQCGK 484
G PY C+QCGK
Sbjct: 391 GGEKPYECNQCGK 403
Score = 23.8 bits (49), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 510 PYHCHQCGKENN 475
PY C QCGK N
Sbjct: 423 PYECKQCGKTFN 434
>AK093163-1|BAC04082.1| 543|Homo sapiens protein ( Homo sapiens
cDNA FLJ35844 fis, clone TESTI2006748, moderately
similar to ZINC FINGER PROTEIN 184. ).
Length = 543
Score = 24.6 bits (51), Expect(2) = 8.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 522 GNWHPYHCHQCGK 484
G PY C+QCGK
Sbjct: 390 GGEKPYECNQCGK 402
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 510 PYHCHQCGKENN 475
PY C QCGK N
Sbjct: 422 PYECKQCGKTFN 433
>AK056659-1|BAB71244.1| 440|Homo sapiens protein ( Homo sapiens
cDNA FLJ32097 fis, clone OCBBF2001101, moderately
similar to ZINC FINGER PROTEIN 91. ).
Length = 440
Score = 24.6 bits (51), Expect(2) = 8.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 522 GNWHPYHCHQCGK 484
G PY C+QCGK
Sbjct: 203 GGEKPYECNQCGK 215
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 510 PYHCHQCGKENN 475
PY C QCGK N
Sbjct: 235 PYECKQCGKTFN 246
>BC089424-1|AAH89424.2| 425|Homo sapiens zinc finger protein 789
protein.
Length = 425
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 316 RTSGSRCP-SPAILTVKKNAPDKQKYQTTIVSYRIEVI 206
+ SGS CP S A +KK P KQK+ + SY+I V+
Sbjct: 81 KASGSACPGSEARHKMKKLTP-KQKFSEDLESYKISVV 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,569,534
Number of Sequences: 237096
Number of extensions: 2463233
Number of successful extensions: 13378
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13366
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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