Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0051
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 510 PYHCHQCGKENNQCTN 463
           PYHC  C ++  Q  N
Sbjct: 37  PYHCSHCDRQFVQVAN 52


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -3

Query: 217 IEVIDEGFTVKRDKPCIFDMSILHNLHNICTIIFLELLYLNTFVTGNQIRTDIV 56
           + ++ E   ++ ++ CI    +  N+HN    IF  +   N  +T   IR  ++
Sbjct: 30  MRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLI 83


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -3

Query: 217 IEVIDEGFTVKRDKPCIFDMSILHNLHNICTIIFLELLYLNTFVTGNQIRTDIV 56
           + ++ E   ++ ++ CI    +  N+HN    IF  +   N  +T   IR  ++
Sbjct: 13  MRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLI 66


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 371 PSSPFRKRWSTSPICRXDCMYLRI 442
           P  P  + W+ +     DC+YL I
Sbjct: 108 PGFPGEEMWNPNTNISEDCLYLNI 131


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 371 PSSPFRKRWSTSPICRXDCMYLRI 442
           P  P  + W+ +     DC+YL I
Sbjct: 108 PGFPGEEMWNPNTNISEDCLYLNI 131


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 358 YIHHRSPVYRS*IERTSGSRCPSPAIL 278
           ++H  SP  RS   +   S+CP  A L
Sbjct: 672 HLHLTSPPARSPSSQAQASQCPQTASL 698


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,565
Number of Sequences: 438
Number of extensions: 5039
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)