Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0051
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64980.1 68414.m07365 expressed protein                             29   3.0  
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi...    29   3.9  
At3g07480.1 68416.m00892 expressed protein                             28   5.2  
At2g01110.1 68415.m00019 thylakoid membrane formation protein / ...    28   5.2  
At5g49380.1 68418.m06111 hypothetical protein contains Pfam doma...    28   6.9  
At5g28990.1 68418.m03586 hypothetical protein                          28   6.9  
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi...    28   6.9  
At3g30230.1 68416.m03820 myosin heavy chain-related similar to M...    27   9.1  
At3g10290.1 68416.m01233 phosphate translocator-related low simi...    27   9.1  

>At1g64980.1 68414.m07365 expressed protein
          Length = 259

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
 Frame = -1

Query: 525 RGNWHPYHCHQCGKENNQCTNPQINIFFIRKYIQSXRQIGEVLHRFRNGEDGVFSII--- 355
           R NW     + CG   N+  +P+I             Q G  LHRF+  ED     I   
Sbjct: 148 RKNWSSMVLYNCGHPKNKTLSPEI----------VNTQTGAFLHRFQWLEDEEIGSIPFV 197

Query: 354 --FITGHRFTVLK*REHQVLAVHRQR 283
             F+ GH   V K    Q  AVH  R
Sbjct: 198 WNFLEGHNRVVEKDPTTQPKAVHYTR 223


>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 657

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 176 FISFDGKTFVYYLYPVTHNRSLI----FLLVWSVFLYC 277
           F+   G    YY+YPV HN   I    + ++W +FL C
Sbjct: 498 FLLLIGIVTRYYIYPVDHNTGSIYNFTYRVLWVMFLGC 535


>At3g07480.1 68416.m00892 expressed protein
          Length = 159

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 355 IHHRSPVYRS*IERTSGSRCPSPAI 281
           IH  SP  RS I RTS +  PSP++
Sbjct: 12  IHRLSPFTRSLIVRTSATSAPSPSL 36


>At2g01110.1 68415.m00019 thylakoid membrane formation protein /
           cpTatC (APG2) identical to thylakoid membrane formation
           protein (cpTatC) GI:15004994 from [Arabidopsis
           thaliana]; contains Pfam profile PF00902:  MttB family;
           identical to cDNA apg2 for cpTatC GI:15004993
          Length = 340

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 475 IIFFAALVAVIWV--PVAS---IWYAEXLIVVLWRKKPSLITILNAYWMAGFSFRLPMFK 639
           ++F+A L    WV  P A    + YAE ++  LW        +L   +  G SF++P+ +
Sbjct: 217 LLFYAGLAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ 276

Query: 640 XL 645
            L
Sbjct: 277 LL 278


>At5g49380.1 68418.m06111 hypothetical protein contains Pfam domain,
           PF04802: Protein of unknown function (DUF625)
          Length = 218

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 212 LYPVTHNRSLIFLLVWSVFLYCQNRWRW 295
           ++P+ H  S+IFL +WS      N W+W
Sbjct: 190 VFPL-HEASIIFLRLWSFCNSWSNVWKW 216


>At5g28990.1 68418.m03586 hypothetical protein
          Length = 213

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 217 IEVIDEGFTVKRDKPCIFDMSILHN 143
           IEVID+  +  R+  C FD+S++ N
Sbjct: 129 IEVIDDFNSFNRENKCFFDVSLMAN 153


>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 725

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 YYLYPVTHNRSLIFLLVWSVFLY 274
           YY+YP+ HN + I+ L     +Y
Sbjct: 579 YYIYPIDHNTNKIYSLTSKTIIY 601


>At3g30230.1 68416.m03820 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 527

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +1

Query: 463 VCTLIIFFAALVAVIWVPVASIWYAEXLIVVLWRKKPSLIT----ILNAYWMAGFSFRLP 630
           +C   I+F        +P A + Y + LI+ L +  P+L+     I+     AGF   +P
Sbjct: 77  LCVYKIYFKGCGLTFPLPKALVCYLDALIIALPQLTPNLLRTIFGIITIAAEAGFVIGVP 136

Query: 631 MFKXLYSMYNSA 666
               L +M +S+
Sbjct: 137 ELNELLTMRSSS 148


>At3g10290.1 68416.m01233 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275
          Length = 355

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 547 IVVLWRKKPSLITILNAYWMAGFSFRLPMFKXLYSMYNSAFL 672
           +++LW      + +LN + ++ + F+ P+F  +  M   A L
Sbjct: 61  LIILWYTSNIGVLLLNKFLLSNYGFKFPIFLTMCHMSACAIL 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,217
Number of Sequences: 28952
Number of extensions: 363383
Number of successful extensions: 961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)