Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0050
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 142 6e-35
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 79 8e-16
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 71 2e-13
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 66 3e-12
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 59 5e-10
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 54 3e-08
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 42 8e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 37 0.002
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 31 0.16
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 30 0.36
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 29 0.48
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 29 0.63
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 2.5
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.4
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.4
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 142 bits (343), Expect = 6e-35
Identities = 63/83 (75%), Positives = 75/83 (90%)
Frame = +2
Query: 254 NADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 433
+ADGNGTIDF EFLTMMARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+
Sbjct: 58 DADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGER 117
Query: 434 LTDEEVDEMIREADIDGDGQVNY 502
L+ EEV +MIREAD DGDG +NY
Sbjct: 118 LSQEEVADMIREADTDGDGVINY 140
Score = 89.8 bits (213), Expect = 3e-19
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +3
Query: 99 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 254
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEV
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEV 57
Score = 56.4 bits (130), Expect = 4e-09
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +2
Query: 299 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 478
M R + D + E REAF +FD+D +G I++ EL VM +LG+ T E+ +MI E D
Sbjct: 1 MTTRNLTD-EQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDA 59
Query: 479 DGDGQVNY 502
DG+G +++
Sbjct: 60 DGNGTIDF 67
Score = 51.2 bits (117), Expect = 1e-07
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +3
Query: 87 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 251
M D EE++ +EAF +FDKDG+G IT +EL V+ SLG+ ++ E+ DMI E
Sbjct: 78 MKDTDNEEEV---REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIRE 129
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 260 DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 421
DGNG I E LT + + + S+EE+ + R D DG+G I+ E V+++
Sbjct: 97 DGNGYITVEE-LTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISS 149
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 117 AEFKEAFSLFDKDGDGTITTKELGTVM-RSLGQNPTEAELQD 239
AE ++ + D DG+GTI E T+M R + E E+++
Sbjct: 48 AELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVRE 89
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 78.6 bits (185), Expect = 8e-16
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +2
Query: 251 SNADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE 430
SN G+ ID +F++ ++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGE
Sbjct: 51 SNELGDA-IDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGE 109
Query: 431 KLTDEEVDEMIREADIDGDGQVNY 502
KL+D EV M++EAD G +Y
Sbjct: 110 KLSDNEVQLMVQEADPTNSGSFDY 133
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +3
Query: 102 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 254
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL 54
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 81 STMADQLTE-EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVT 257
S ++++L E E E+ +AF +FDKD G I T + M++LG+ ++ E+Q M+ E
Sbjct: 65 SFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD 124
Query: 258 RTET 269
T +
Sbjct: 125 PTNS 128
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 326 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 469
+ +E++EAF ++D D +G I + + V+ +LG +TD E+ ++ E
Sbjct: 6 EQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNE 53
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/79 (40%), Positives = 47/79 (59%)
Frame = +2
Query: 263 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 442
G G + +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D
Sbjct: 86 GKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDD 145
Query: 443 EEVDEMIREADIDGDGQVN 499
+E++ MI E D+D DG++N
Sbjct: 146 QELEAMIEEFDLDQDGEIN 164
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 96 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVTRT 263
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + +T
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKT 85
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 326 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 490
+ ++I EAF++FD D + I ELR M LG EV +++R+ D G G
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKG 88
Score = 35.1 bits (77), Expect = 0.010
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 209 TEPHRSRTSRHDQ*SNADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFI 388
TE R + + ++D + ID+ E M R + + E+ + R FDK G G++
Sbjct: 32 TEEQRQDINEAFKLFDSDKDNAIDYHELRAAM-RALGFNAEKSEVLKILRDFDKTGKGYL 90
Query: 389 SAAELRHVMT-NLGEKLTDEEVDEMIREADIDGDGQVN 499
+ VMT + E+ EE+ D D G+++
Sbjct: 91 QMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKIS 128
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 66.5 bits (155), Expect = 3e-12
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = +2
Query: 275 IDFPEFLTMMARKMK-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 448
+D +FL ++ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE
Sbjct: 55 VDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEE 114
Query: 449 VDEMIREADIDGDGQVNY 502
+DE+++ + DG VNY
Sbjct: 115 MDELLKGVPVK-DGMVNY 131
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +3
Query: 123 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM 242
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI 47
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 120 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 254
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV 122
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 344 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 460
++AF +FD+ G G I + ++ G+ T E+ E+
Sbjct: 9 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI 47
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 59.3 bits (137), Expect = 5e-10
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Frame = +2
Query: 260 DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNL 424
DG G +DF EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL
Sbjct: 68 DGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNL 127
Query: 425 GEKLTDEEVDEMIREADIDGDGQVNY 502
E + VD+ I E D D DG++++
Sbjct: 128 REDQLQQIVDKTIMEVDKDRDGKISF 153
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +3
Query: 96 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 254
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E + M +
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESI 93
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = +2
Query: 266 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 445
N I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +
Sbjct: 94 NPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQ 153
Query: 446 EVDEMIR 466
EV+ ++R
Sbjct: 154 EVESILR 160
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/42 (30%), Positives = 30/42 (71%)
Frame = +2
Query: 335 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 460
+E++EAF + DKDG+G I +++ ++T+L + +++ ++ M
Sbjct: 48 QELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHM 89
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 129 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVT 257
EAFS FD G I + + S+G E++ ++ T
Sbjct: 121 EAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILRSYT 163
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 302 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 481
M+ K + +EE EAF +FD G+I +LR LGE LT E++ M+ A +
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGTN 60
Query: 482 G 484
G
Sbjct: 61 G 61
Score = 32.3 bits (70), Expect = 0.068
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 108 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 248
E E +EAF LFD G I ++L LG+N T+ +LQ M++
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLD 55
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 254 NADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 415
+AD NG IDF EF+ ++ + + +++ AF+++D D NG IS E+ ++
Sbjct: 73 DADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +2
Query: 266 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 445
+G ++ EF + + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 446 EVDEMIREADIDGDGQVNY 502
++ + D+D +G ++Y
Sbjct: 100 KLIWAFQLYDLDNNGLISY 118
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -3
Query: 487 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 353
V++ I L ++ L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 93 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEVTRTE 266
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +++ +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSISKLD 597
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 487 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 341
V++ I L ++ ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = +2
Query: 320 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 499
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 500 Y 502
+
Sbjct: 59 F 59
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 305 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 481
AR++K I + ++ D+ + +A EL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELE 168
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 362 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 475
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 237 LEVRLLWGSVLATSSRCPALWS*WCHR 157
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 362 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 475
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 499 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 398
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 129 EAFSLFDKDGDGTITTKELGTVMR 200
+ F FD+D DG + +EL + R
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFR 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,229
Number of Sequences: 5004
Number of extensions: 39828
Number of successful extensions: 156
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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