Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0049
         (637 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3Q5X9 Cluster: AMP-dependent synthetase and ligase; n=...    33   7.6  
UniRef50_Q70MH4 Cluster: Alpha 1,6 mannosyltransferase; n=1; Yar...    33   7.6  

>UniRef50_A3Q5X9 Cluster: AMP-dependent synthetase and ligase; n=8;
           Mycobacterium|Rep: AMP-dependent synthetase and ligase -
           Mycobacterium sp. (strain JLS)
          Length = 500

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 20  HEAAAFSPRRILTRDSSNFVCIGNFSKRARAHSSVVLRFVNISSRV 157
           H+AA  +P R+L RD  + +  G   +RA A +S ++R + + S V
Sbjct: 10  HDAARDTPDRVLVRDGDDELTCGALQERATALASALMRRMPVGSVV 55


>UniRef50_Q70MH4 Cluster: Alpha 1,6 mannosyltransferase; n=1;
           Yarrowia lipolytica|Rep: Alpha 1,6 mannosyltransferase -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 397

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -2

Query: 540 TICFYFTTSXTRIKCSVIIRGDVTFIRQRIKKLTLETVRSL 418
           T+CF F  S  +I  +V++ GD++    +I K+  ET ++L
Sbjct: 18  TVCFLFFGSSEKIAPTVLLPGDMSAFENKIYKMRAETEKAL 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,523,446
Number of Sequences: 1657284
Number of extensions: 10553246
Number of successful extensions: 23127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23107
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)