Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0049
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    29   4.1  
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318     29   4.1  

>11_04_0460 - 17955102-17955146,17955253-17955310,17955442-17955593,
            17955888-17955993,17956101-17956222,17956766-17956834,
            17956969-17957214,17957331-17957373,17957449-17957520,
            17957954-17958066,17958158-17958238,17958343-17958415,
            17959413-17959519,17960410-17960514,17960684-17960974,
            17961621-17961707,17961774-17961842,17961917-17961973,
            17962057-17962155,17962223-17962312,17962395-17962511,
            17964164-17964244,17964353-17964502,17964812-17964956,
            17967359-17967510,17967647-17967784,17967838-17967914,
            17968032-17968134
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 128  KRPTNALEPASKSFQCTQSYWNRELGFDAAR 36
            K  T+ +  AS   QC  + WNR++ +D ++
Sbjct: 920  KANTHIMHGASHFLQCVHALWNRDITYDLSK 950


>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
          Length = 878

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 3   NSARGDTRPPRSRRVES*LAIPVTLCALETFRSG 104
           N A G  RPPR+RR++  +  P TL  L+  R+G
Sbjct: 33  NGAGG--RPPRARRMQRTMTTPGTLAELDEERAG 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,946
Number of Sequences: 37544
Number of extensions: 296081
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)