Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0048
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   4.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.9  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   7.8  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   7.8  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 216 FRANNGTSTGTTEKNGMWKP--FVYCFHIRLCLC 121
           + +++ T+    E+   W+   F+ C HIR C+C
Sbjct: 29  YDSDSPTTVHHDERKESWRSHGFIVCLHIRCCIC 62


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 353 SNREERVDDHSFHXXXXXXXXX*FVSTGQYVMTFVNSVQ 237
           +N + R+  HSF            V +G+++  F+NSVQ
Sbjct: 470 TNEKIRLSHHSFKIKNRQKVMKLSVRSGRWLQQFINSVQ 508


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 264 RNDLREQCAVSRSEDPFRANNGTSTGTTEKNGMWKPFVYCFHIRL--CLC 121
           + D+R  C++S       + +GT +   + NG W P  Y  H     C+C
Sbjct: 14  KQDVRGVCSISNELIGSASRDGTYSVWEQINGEWTPHFYENHEGFVNCVC 63


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 70  NDIPDLKQKSALVTTEITKTQSDVK 144
           + + D K  +A++++E+TK+  DVK
Sbjct: 738 SSLSDAKNTNAILSSELTKSSEDVK 762


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 633 SQRVVLL*FRTYSSDALIAPMACISL 556
           + R++L    + + D+LIAP+ C+SL
Sbjct: 44  TNRIMLSVVSSLNPDSLIAPLLCVSL 69


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 261 YVLAGTNKSDDQSGIIRYVKRMVIHPLFSVGPY---WLDVEDFNLKQVAARWD 410
           ++  G   SD        V R ++ PLFS+G +   W  V + ++  V A++D
Sbjct: 347 FIFLGPKASDVYESYSALVGRPLLPPLFSIGYHQCRWNYVSEEDVLNVDAKFD 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,938
Number of Sequences: 5004
Number of extensions: 61919
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)