Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0048
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754...    30   1.5  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    29   2.6  
09_02_0525 - 10217332-10217498,10217537-10217750                       29   3.5  
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807...    29   3.5  
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785...    29   4.6  
03_05_0896 - 28592658-28593331,28594069-28595455                       28   8.0  

>04_01_0580 -
           7539208-7539328,7539409-7539579,7539658-7540024,
           7540093-7540516
          Length = 360

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 124 KTQSDVKAVHERFPHAVLFGGTCGGSIISPKWI-LTAGH 237
           +T++D KA+HE  P     GG    S+++PK + L  GH
Sbjct: 125 RTEADSKAIHEPPPMKKRRGGKVNASLLAPKKLDLDKGH 163


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 273 RPIRNDLREQCAVSRSEDPFRANNGTSTGTTEKNG 169
           R IR   RE+  V+R ED  R  N  S  T + NG
Sbjct: 382 RLIRKKEREEQEVARREDQLRNENAESEATKQSNG 416


>09_02_0525 - 10217332-10217498,10217537-10217750
          Length = 126

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 197 VPLLARNGSSLRDTAHCSRRSLRIGR 274
           VPLLAR G ++R+T     R  R GR
Sbjct: 97  VPLLARGGDTMRETVEAMLRRARRGR 122


>02_04_0084 -
           19579104-19579230,19580323-19580417,19580578-19580719,
           19581155-19581189,19581493-19581632,19581678-19581770,
           19584007-19584244
          Length = 289

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 597 SSDALIAPMACISLRITPPCSS 532
           S   LI PMAC+S ++ P C S
Sbjct: 224 SGSRLILPMACVSFQVIPSCLS 245


>01_06_0997 +
           33676441-33676758,33678223-33678314,33678443-33678540,
           33678824-33678979,33679106-33679731,33679826-33679896,
           33679987-33680241,33680337-33680454,33680595-33680766,
           33680854-33681395
          Length = 815

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 94  KSALVTTEITKTQSDVKAVHERFPHAVLFGGTCGGSIISP 213
           KSA+VTT  TK + D   + E  P  V      GG  I+P
Sbjct: 629 KSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINP 668


>03_05_0896 - 28592658-28593331,28594069-28595455
          Length = 686

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +1

Query: 67  ANDIPDLKQKSALVTTEITKTQSDVKAVHERFPHAVLFG-GTCGGSI 204
           + +IPDLKQ          +    + A     P +   G G CGG +
Sbjct: 182 SGEIPDLKQPLQQFNVSFNQLNGSIPATLRTMPRSAFLGTGLCGGPL 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,897
Number of Sequences: 37544
Number of extensions: 456953
Number of successful extensions: 1063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)