Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0048
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 33 0.19
Z81497-4|CAB04079.2| 458|Caenorhabditis elegans Hypothetical pr... 31 0.78
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 30 1.8
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.4
U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like pr... 29 2.4
AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like ... 29 2.4
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 29 3.1
U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like pr... 29 3.1
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 3.1
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 190 CGGSIISPKWILTAGHC 240
CGGS+I P ++LTA HC
Sbjct: 84 CGGSLIDPNFVLTAAHC 100
>Z81497-4|CAB04079.2| 458|Caenorhabditis elegans Hypothetical
protein F10C2.7 protein.
Length = 458
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +1
Query: 70 NDIPDLKQKSALVTTEITKTQSDVKAVHERFPHAVLFGGTCGGSIISPKWILTAGHCTLF 249
ND P L QK + E+T Q D H V + C +I WI + T
Sbjct: 205 NDDPQLNQKVS--AKELTTIQKDKTKAHIERDSFVPYWEICKNRVILTVWINSFFEMTTL 262
Query: 250 TKVITYWPV 276
++TY P+
Sbjct: 263 ILLLTYSPI 271
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 181 GGTCGGSIISPKWILTAGHCTL 246
G CG ++I W++TA HC L
Sbjct: 63 GILCGATVIDDFWLVTAAHCAL 84
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 70 NDIPDLKQKSALVTTEITKTQSDVKAVHER 159
NDI +LK+K A EI K +SD+ A+H++
Sbjct: 1123 NDITELKRKHA---AEIDKLKSDISALHDK 1149
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 70 NDIPDLKQKSALVTTEITKTQSDVKAVHER 159
NDI +LK+K A EI K +SD+ A+H++
Sbjct: 1196 NDITELKRKHA---AEIDKLKSDISALHDK 1222
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 70 NDIPDLKQKSALVTTEITKTQSDVKAVHER 159
NDI +LK+K A EI K +SD+ A+H++
Sbjct: 1196 NDITELKRKHA---AEIDKLKSDISALHDK 1222
>U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like
protein protein 8 protein.
Length = 594
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 58 QPGANDIPDLKQKSALVTTEITKTQS 135
+PG+ DI DLKQK A++T E +S
Sbjct: 55 KPGSTDINDLKQKIAVLTKEFQGKES 80
>AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like
protease protein 7 protein.
Length = 522
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 187 TCGGSIISPKWILTAGHC 240
TC G+I+SP+ IL A HC
Sbjct: 192 TCTGTIVSPRHILIATHC 209
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 145 AVHERFPHAVLFGGTCGGSIISPKWILTAGHC 240
+V RFP CGG +I+P ++T+ HC
Sbjct: 33 SVITRFPDGTT--NVCGGVLIAPSIVITSAHC 62
>U97408-1|AAB93344.2| 360|Caenorhabditis elegans Trypsin-like
protease protein 6 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 190 CGGSIISPKWILTAGHCTLFTKVITYW 270
C G++ SP+ ILTA HC T T W
Sbjct: 75 CSGTLTSPRHILTATHCAA-TYTETEW 100
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 190 CGGSIISPKWILTAGHC 240
CGG++I+ K +LTA HC
Sbjct: 62 CGGTLITLKHVLTAAHC 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,709
Number of Sequences: 27780
Number of extensions: 366833
Number of successful extensions: 896
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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