Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0048
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13660.1 68417.m02124 pinoresinol-lariciresinol reductase, pu...    29   3.8  
At5g62660.1 68418.m07864 F-box family protein contains Pfam prof...    28   6.7  
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    28   6.7  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    28   6.7  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    28   6.7  
At5g66100.1 68418.m08327 La domain-containing protein similar to...    27   8.9  

>At4g13660.1 68417.m02124 pinoresinol-lariciresinol reductase,
           putative similar to pinoresinol-lariciresinol reductase
           TH1 [Tsuga heterophylla][GI:7578915]; contains
           isoflavone reductase domain PF02716
          Length = 317

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -1

Query: 643 ADHIPESCIALI*NIFVGCVDSSHGVHIFTHHAPMLVSSVASISDSTPIGRF 488
           +DH  +S ++ +  + V  V +  GVH  TH+ P+ +  VA+I ++  + RF
Sbjct: 70  SDH--QSLVSAVKQVDV-VVSAMSGVHFRTHNIPVQLKLVAAIKEAGNVKRF 118


>At5g62660.1 68418.m07864 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 379

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 97  IFVLNPVCHWRRVEVARTHLP 35
           +FVL P   W+R+E  + HLP
Sbjct: 221 VFVLEPGGSWKRIEFDQPHLP 241


>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +1

Query: 142 KAVHERFPHAVLFGGTCGGSIISPKWILTAGHCTLFTKVITYWPVLTNQ 288
           K  H R  H V  GG  GGS I   +        LF K+    P+LTNQ
Sbjct: 77  KKRHVRGDHGVPLGGIGGGS-IGRSYKGEFQQFKLFPKICEEAPILTNQ 124


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 512 GYAGYGTDEHGGVMRKDMHAMGAINASD 595
           G+A YG   HG   R +M+A   +N  D
Sbjct: 45  GHAPYGASSHGSERRPNMNAGNLLNGGD 72


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 512 GYAGYGTDEHGGVMRKDMHAMGAINASD 595
           G+A YG   HG   R +M+A   +N  D
Sbjct: 46  GHAPYGASSHGSERRPNMNAGNLLNGGD 73


>At5g66100.1 68418.m08327 La domain-containing protein similar to
           SP|P40796 La protein homolog (La ribonucleoprotein) (La
           autoantigen homolog) {Drosophila melanogaster}; contains
           Pfam profile PF05383: La domain
          Length = 453

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 249 EQCAVSRSE-DPFRANNGTSTGTTEKN 172
           E  AV+ S+  PFR NN TS+ +T  N
Sbjct: 157 ENSAVNNSQRKPFRRNNNTSSSSTSSN 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,677
Number of Sequences: 28952
Number of extensions: 345868
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)