Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0047
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                31   1.1  
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     31   1.1  
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)             29   3.4  
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)                   29   3.4  
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)             29   4.4  
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)                  28   7.7  
SB_22567| Best HMM Match : Trypsin (HMM E-Value=6.6e-30)               28   7.7  

>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 238 LCLLTFYSTTFIK*CKPE*WYIQ 170
           LC+LTFY+T+ I  C P  W  Q
Sbjct: 358 LCMLTFYNTSLIMLCLPMVWLFQ 380


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 66  WYLRGVLSKCGISPGHTECDPTYYMVYTDVGPHYGWIYHHSG 191
           WYL G      +S G   C  TYY V+  V  +  WI   +G
Sbjct: 278 WYLHGA-----VSYGKLHCPTTYYTVFARVASYTDWIKQVTG 314



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 120 CDPTYYMVYTDVGPHYGWIYHHSG 191
           C P +Y VYT V  +  WI+   G
Sbjct: 532 CSPKHYSVYTRVNSYMKWIFDRIG 555


>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
          Length = 476

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 93  CGISPGHTECDPTYYMVYTDVGPHYGWIYH 182
           C ++  HT C PT  +   D+ PH+ + YH
Sbjct: 108 CPLATSHTSCIPTIGVPSNDI-PHFMYTYH 136


>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
          Length = 698

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 338 VLLQYYHNLKNMYWVISQFLFTLISTC 258
           +L   YHNLKNM W  +  +FT    C
Sbjct: 614 LLKTIYHNLKNMRWSKALLVFTATYAC 640


>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
          Length = 234

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 66  WYLRGVLSKCGISPGHTECDPTYYMVYTDVGPHYGWIYHHSG 191
           W L GV     +S G   C+ T Y VYT V  +  WI   +G
Sbjct: 143 WTLYGV-----VSFGAGNCEVTSYTVYTKVSNYLDWITKRAG 179


>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  WYLRGVLSKCGISPGHTECDPTYYMVYTDVGPHYGWI 176
           W LRG+     +S G  EC   +Y V+T V  +  WI
Sbjct: 602 WVLRGI-----VSWGSRECSTEFYTVFTRVINYMPWI 633


>SB_22567| Best HMM Match : Trypsin (HMM E-Value=6.6e-30)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  WYLRGVLSKCGISPGHTECDPTYYMVYTDVGPHYGWI 176
           W LRG+     +S G  EC   +Y V+T V  +  WI
Sbjct: 142 WVLRGI-----VSWGSRECSTEFYTVFTRVINYMPWI 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,511,485
Number of Sequences: 59808
Number of extensions: 416161
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)