Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0047
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 453 KAITIDRSFECSKTIRLINFLLPTPKVRFCNYVIQ 557
           K   +D   E SKTI     L  +P  +F NY+I+
Sbjct: 460 KGYCMDLLKELSKTINFTYSLALSPDGQFGNYIIK 494


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 162 HYGWIYHHSGLHYL 203
           HY W+YH   L Y+
Sbjct: 110 HYLWLYHDKTLLYM 123


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 82  SFLNVESHLDIPNVILPT 135
           +FL +E+  D+P V  PT
Sbjct: 257 TFLGLEARTDLPKVPYPT 274


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 106 LDIPNVILPTTWFT 147
           ++IPNV LPT+ ++
Sbjct: 360 MEIPNVTLPTSTYS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,478
Number of Sequences: 438
Number of extensions: 4536
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)