Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0046
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   4.4  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   4.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.8  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 435 GWHCTAKHYSELRSDPGL 382
           GW+  ++ YS++ ++PGL
Sbjct: 102 GWNEGSQKYSQVAANPGL 119


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 435 GWHCTAKHYSELRSDPGL 382
           GW+  ++ YS++ ++PGL
Sbjct: 102 GWNEGSQKYSQVAANPGL 119


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 334 IPNLNGMLNWSLFTT 290
           +P + GM+NW++ +T
Sbjct: 432 LPPIGGMMNWNMPST 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,918
Number of Sequences: 336
Number of extensions: 3936
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)