Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0046
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    29   0.88 
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 325 LNGMLNWSLFTTPTLEYWLLRVSISQRFRQYSWRM 221
           L+ MLN+S+ +  ++  WL++  ++   R Y+W +
Sbjct: 622 LDKMLNYSIISITSIIEWLIKQDVTIWSRSYTWSL 656


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 375 LHPDQDQTLVHYSVWPYSASQKKDSLVAISQDPATKIVERRRQGIS-VDSKYGQS 536
           LHPD   T +H  +    +S   D+ + ISQ   +  +++    +S +D+K   S
Sbjct: 69  LHPDLYSTFIHTGIATIVSSSDNDNKICISQGILSVTLDKDSYLVSGIDAKPSSS 123


>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 511 Q*TLSTVNPHMAVIYAQGYTYSSDWRNFGAKFTS 612
           Q  +S  N H+AV+Y+    YS   R  G+  T+
Sbjct: 11  QIVISIFNSHLAVLYSIALCYSVQGRILGSSTTN 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,365
Number of Sequences: 5004
Number of extensions: 67490
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)