Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0046
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related p...    29   2.5  

>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 438 KKDSLVAISQDPA---TKIVERRRQGISVDSKYGQSTH 542
           KKD+L   S+ PA   T+I+ RR+Q  SV S   +S+H
Sbjct: 153 KKDNLDVESRSPARRETRIMSRRKQESSVSSCSSESSH 190


>Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical
           protein C08B11.6 protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 350 SRFNFDSEFERYVKLEFIHNTYTGILV-AKGIHKPTFPSIFL 228
           +RF  ++  +RY+  +F H+T+ G++   K  H P  PSI L
Sbjct: 225 NRFQENTTMKRYIMPDF-HSTFRGVVKDVKEPHDPQIPSIHL 265


>U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related
           protein-like protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 350 SRFNFDSEFERYVKLEFIHNTYTGILV-AKGIHKPTFPSIFL 228
           +RF  ++  +RY+  +F H+T+ G++   K  H P  PSI L
Sbjct: 225 NRFQGNTTMKRYIMPDF-HSTFRGVVKDVKEPHDPQIPSIHL 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,732
Number of Sequences: 27780
Number of extensions: 365727
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)