Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0046
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43255.1 68415.m05376 expressed protein                             31   1.0  
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    27   9.5  

>At2g43255.1 68415.m05376 expressed protein
          Length = 214

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 536 HTWP*STRKDTHTLPTGGTLALSLLPVDYFTNLASLLTQGGYSLW 670
           HT    T+K    +   GT+A++L P     +LA ++T+G    W
Sbjct: 16  HTMGVDTKKSLEIIHLRGTVAVNLRPYTKIEDLADMMTKGAKYAW 60


>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 696 KVVLS*SGVQSEYPPCVSSDAKLVK*STGSKLSAKV 589
           K+VL  + +Q   P  VSS +  V  STG K+S++V
Sbjct: 91  KIVLKNAELQRMNPAAVSSTSDRVGFSTGQKISSRV 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,178
Number of Sequences: 28952
Number of extensions: 344209
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)