Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0045
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    54   2e-08
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.6  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   9.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 74  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 247
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 248 NNKDF 262
           NN  F
Sbjct: 105 NNFTF 109



 Score = 44.8 bits (101), Expect = 9e-06
 Identities = 26/68 (38%), Positives = 30/68 (44%)
 Frame = +1

Query: 304 IVENGAGTG*TVYPPLSSNIAHRGXSXXLAIFSPHLAGXSSXXXXXXXXXXXXXXXXXXX 483
           + E G G G TVYPPLSS  +H G +  LAI S  L G SS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 484 SFXQLPXF 507
           S  Q+P F
Sbjct: 184 SLYQMPLF 191


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 264 TPTPLPYIINFKKNCRKWCRNRMNS 338
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 86  DFLIQLELKVLKMFQL 39
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,214
Number of Sequences: 5004
Number of extensions: 16683
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)