Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0044
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    29   4.3  

>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 566 SYYNIINRSKLKYIIFLILLEEETQFY 646
           SY NI N+  +KY + L+L++EE + Y
Sbjct: 262 SYRNINNKFSVKYYLNLVLVDEEDRRY 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,843
Number of Sequences: 37544
Number of extensions: 205254
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)