Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0043
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    30   0.70 
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    30   0.70 
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    30   0.70 
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    30   0.70 
U53336-9|AAA96181.1|  257|Caenorhabditis elegans Pax (paired box...    29   1.6  
AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical ...    28   3.7  
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 314 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 427
           EQ N  +   +E LDAK + HE+ + A   +++S+  D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 314 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 427
           EQ N  +   +E LDAK + HE+ + A   +++S+  D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
           and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 314 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 427
           EQ N  +   +E LDAK + HE+ + A   +++S+  D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 314 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 427
           EQ N  +   +E LDAK + HE+ + A   +++S+  D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368


>U53336-9|AAA96181.1|  257|Caenorhabditis elegans Pax (paired box)
           transcriptionfactor protein 1 protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 184 TPSVEEIMRS*RQLKRGDVAWKLVDGRHCSEDGQDRGGVPHPQRADE*LHRRHQGGS 354
           TP V E +RS ++   G  AW++ D R  S D  DR  +P        L  ++ G S
Sbjct: 137 TPKVVEYIRSLKRSDPGIFAWEIRD-RLISADICDRANLPSVSSISRILRNKNGGNS 192


>AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical
           protein Y59A8A.3 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 368 ETHEEKR--EAYINELRSRLKDHLEGVEKTR 454
           E HE K+  E  +NEL  R K HL+ +E+ R
Sbjct: 422 EFHEYKKQQEVIVNELNHREKAHLDTIEQLR 452


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -1

Query: 200 SSTEGVFSGESARRGTGTPTGSASITSYARPP 105
           +ST   +SG + +R +G+ TGS+S TS + PP
Sbjct: 106 ASTSAAWSG-TGQRLSGSTTGSSSSTSSSAPP 136


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 143 WAYRFPVAPTHPKRLLPS 196
           W  R P+APTH KRL  S
Sbjct: 42  WERRAPLAPTHVKRLTKS 59


>AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical
           protein M151.4 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +2

Query: 362 KMETHEEK-REAYINELRS---RLKDHLEGVEK 448
           K++T ++K  E Y+N++R     LKD+ EG+EK
Sbjct: 204 KLQTDKDKLEEEYMNDMRDLKKALKDNQEGLEK 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,467,674
Number of Sequences: 27780
Number of extensions: 152432
Number of successful extensions: 650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)