Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0043
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   2.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 406 LVDVGLAFFLVGLHLGVESLLGGDDEVI 323
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 406 LVDVGLAFFLVGLHLGVESLLGGDDEVI 323
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 17  LMDSDVIFVTINYRLGILGFLSTEDEVV 44


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 406 LVDVGLAFFLVGLHLGVESLLGGDDEVI 323
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   SDAIQLFRSLCRLKVEAMEVETKSTEIR 87
           SD I LFR    +++ A E++    EIR
Sbjct: 109 SDDISLFRGPEGIQINATELQKIELEIR 136


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 58  PWLPLLTDR 32
           PWLPLL +R
Sbjct: 545 PWLPLLRNR 553


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 308 GCGTPPRSWPSSEQWRPSTSFQATSPL 228
           G G    SW  +  WR + S+    PL
Sbjct: 214 GYGLIVYSWEQNRSWRITHSYFMPDPL 240


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 235 DVAWKLVDGRHC 270
           DVAW   D +HC
Sbjct: 114 DVAWFPFDDQHC 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,544
Number of Sequences: 438
Number of extensions: 1631
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)