Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0043
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67930.1 68414.m07757 Golgi transport complex protein-related...    29   1.5  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   2.0  
At1g40133.1 68414.m04768 hypothetical protein                          29   2.0  
At5g61040.1 68418.m07660 expressed protein                             27   4.7  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   4.7  
At3g12950.1 68416.m01613 expressed protein                             27   8.2  
At1g75490.1 68414.m08770 DRE-binding transcription factor, putat...    27   8.2  

>At1g67930.1 68414.m07757 Golgi transport complex protein-related
           similar to golgi transport complex protein (GTC90)
           GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
           transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
          Length = 832

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -1

Query: 302 GTPPRSWPSSEQWRPSTSFQATSPLFSCLQLLMISSTEGVFSGESARRGTGTPTGSA 132
           G PP   PSS    P  SF AT P+ S      +SS+    S  SA   +G+P  +A
Sbjct: 32  GAPPPQTPSSSSSSPLDSF-ATDPILS----PFLSSSFSSASFSSAALASGSPASTA 83


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 340 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 438
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 317 QTNNFIVATKEALDAKMETHEEKREAYINE 406
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 311 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 454
           S   ++F V  +E LD   +E  EEK   ++NE+  +L   +  VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  VEAMEVETKSTEIRCQEMSKGGLAYEV 126
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At3g12950.1 68416.m01613 expressed protein 
          Length = 558

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 230 LFSCLQLLMISSTEGVFSGESARRGTGTPTGSASITSYARPPF 102
           L + LQL +I++ EG+ +    +R   T TG +S+ + + PP+
Sbjct: 411 LLTHLQLDLITTDEGLKAAVQEQRAAST-TGMSSMVADSSPPY 452


>At1g75490.1 68414.m08770 DRE-binding transcription factor, putative
           similar to DREB2A GB:BAA33794 GI:3738230 from
           [Arabidopsis thaliana] (Plant Cell 10 (8), 1391-1406
           (1998))
          Length = 197

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 179 SGESARRGTGTPTGSASITSYARPPFDISWQRISVDL 69
           +G  +   + +P  S  ++S  R   +ISW+ I+VDL
Sbjct: 112 TGGKSSSDSESPCSSNEMSSCGRVTEEISWEHINVDL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,209,241
Number of Sequences: 28952
Number of extensions: 147315
Number of successful extensions: 584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)