Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0042
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.3  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    26   5.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.0  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 395 FDAATEEREHATKLIDYLLMRGKLTGSVTNLITYRAPATRRGRAAHQPSSTPSS 556
           +D   E    A +LID LL R  +     N +  ++ +    + +H   STPS+
Sbjct: 61  YDKRFERGSEADELIDQLLSRVSMLEKRLNEVGTKSQSDYENQQSHNLPSTPSA 114


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 478 NQPHHVQGPRHTSWESGASAL 540
           NQP     PRH S+E   S L
Sbjct: 181 NQPRSADSPRHASFEKACSEL 201


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 210 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 103
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,417
Number of Sequences: 5004
Number of extensions: 40503
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)