Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0042
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    31   0.78 
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    30   1.8  
06_03_0667 - 23290585-23290962                                         29   4.1  
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832     28   5.5  
03_02_0158 - 6020682-6020796,6021112-6021329,6021548-6021589,602...    28   5.5  
02_04_0551 + 23801464-23801802                                         28   7.2  
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    27   9.6  

>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 392 FFDAATEEREHATKLIDYLLMRG---KLTGSVTNLITYRAP 505
           F +++ EER+HA KLI Y  MRG   +L   VT L  +  P
Sbjct: 162 FKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHP 202


>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 392 FFDAATEEREHATKLIDYLLMRG---KLTGSVTNLITYRAP 505
           F +++ EER+HA KL+ Y  MRG   +L   VT L  +  P
Sbjct: 130 FKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHP 170



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 276 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 392
           C   + +QI  E  AS  Y ++ AYF  D V   GFA +
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKF 129


>06_03_0667 - 23290585-23290962
          Length = 125

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 626 GKSLKLLSQVLMTSRMLLVTSLSSLRACSRADAPLSH 516
           G+++ LL  +++TSR L++T+ S   A    DA L H
Sbjct: 39  GRAMMLLGAIVLTSRQLIITTSSG--ATHSVDAELYH 73


>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
          Length = 165

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +2

Query: 230 SAPSPSGMMAH-HGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGE 370
           SAP PSG     HGA         DP    R    + HGG  +  +G+
Sbjct: 51  SAPPPSGHRTPPHGAGSSTPQRNKDPASRPRSQSAVGHGGGSVPAWGQ 98


>03_02_0158 -
           6020682-6020796,6021112-6021329,6021548-6021589,
           6021680-6021721,6021929-6022028,6022149-6022210,
           6022981-6023052
          Length = 216

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 451 HEGQADRLRNQPHHVQGPRHTSWESGASALE 543
           H G +  L +QPHH QG  H   + G  +L+
Sbjct: 126 HSGSSTVLADQPHHHQGLLHPHPDQGDHSLQ 156


>02_04_0551 + 23801464-23801802
          Length = 112

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +1

Query: 295 NRSRRKWPRQSST*PWGLTSRSIR*TAPASRXILRCCD*RTRARDQAH*LPA--HEGQAD 468
           +RSRR W R+    PW    R  R  A   R    C +   R  D     PA    G A 
Sbjct: 33  SRSRRHWRRRREPRPW---RRRQRGAAGGGRTWTTCGEVEQRRWDGNGEFPALVDSGCAY 89

Query: 469 RLRNQP--HHVQGPR 507
           R R +P  +H  GPR
Sbjct: 90  RARIRPTNNHKTGPR 104


>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 350 LLDRYGEPPRLREXFFDAATEEREHATKLIDYLLMRGKLTGSVTNLI 490
           LLDR G   R    FF + + E       +DY L  G L   +TN +
Sbjct: 430 LLDRQGPIYREDTAFFVSQSGETADTLLALDYALENGALCVGITNTV 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,464
Number of Sequences: 37544
Number of extensions: 337471
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)