Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0042
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.20
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018) 29 4.2
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 28 7.4
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 7.4
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 27 9.8
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 27 9.8
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 270 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 392
+ C + KQI E+ AS YL+M +F D V PGF Y
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 374 PRLREXFFDAATEEREHATKLIDYLLMRG 460
P + F A+ EEREHA KL+ + RG
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERG 260
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 288 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 383
+ KQI +E+ A YL+M +F D +N PGF
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGF 69
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 374 PRLREXFFDAATEEREHATKLIDYLLMRG 460
P + F +A+ EEREHA KL + L RG
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRG 207
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 288 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 392
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 184
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 270 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 383
+ C + KQI E+ AS Y +M YF + V+ PGF
Sbjct: 10 EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGF 47
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 288 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 392
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKY 169
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 374 PRLREXFFDAATEEREHATKLIDYLLMRG 460
P + F A+ EEREHA KL + L RG
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRG 192
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 288 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 392
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 52
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 374 PRLREXFFDAATEEREHATKLIDYLLMRG 460
P + F A+ EEREHA KL + L RG
Sbjct: 47 PGFHKYFIKASHEEREHAEKLAKFQLQRG 75
>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
Length = 1066
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 347 LLLDRYGEPPRLREXFFD-----AATEEREHATKLIDYLLMRGKLTGSVTNLITYRAPAT 511
+L DRYG+P R+ E + + E + D+L+M + SV L + + +
Sbjct: 398 ILKDRYGDPFRIYEAYREKLNAWPVCTTSEELQEYSDFLVMTQETMKSVRYLKKFDSFSA 457
Query: 512 RRGRAAHQPSSTPSSWR 562
R A P+ + WR
Sbjct: 458 TRDLAVRLPTYYENKWR 474
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 308 GSGRVNPV--LSHGGLLLDRYGEPPRLREXFFDAATEERE 421
GSG+ + L GGL+ D+YG PR + F A E ++
Sbjct: 672 GSGKTYTIGGLDTGGLMDDQYGIIPRAVKQIFQAFEESKQ 711
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 407 TEEREHATKLIDYLLMRGKLTGSVTNLITYRAPATRRG 520
++ RE A + I L+ LTGS T +I R P RG
Sbjct: 1841 SDHREQAAQEIQAFLLDMILTGSKTEIIELRGPDKPRG 1878
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 287 DEETDPGGSGRVNPVLSHGGLLLDRYGEP 373
D DPGG R++ + HGG +DR G P
Sbjct: 226 DRPMDPGGP-RMDHPMGHGGPPMDRGGPP 253
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 484 PHHVQGPRHTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDLPP 630
P+H+ G TSWE A + + N+ R I+ + S PP
Sbjct: 356 PYHLAGTSRTSWECHNEASLSRAYWVNQLLNTFRNNIRNRKDSMPPRPP 404
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,647
Number of Sequences: 59808
Number of extensions: 342056
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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