Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0042
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    31   0.70 
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    31   0.93 
AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    30   1.6  
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    29   2.1  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z82082-8|CAE53736.1|   83|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 508 HTSWESGASAL----EHALKLESDVTNSIREVIKTCESSFNDLP 627
           H +W + +SA+    ++ L L  +  N+++  +K+CE +FN LP
Sbjct: 240 HYNWVTNSSAMATANDNCLVLVFNGNNAVKVDVKSCEGNFNPLP 283


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 230 SAPSPSGMMAHHGADLLQHDEETDPGGSGRVNPVLSH 340
           S P PSGMMA + +   QH  +  P GS + +PV  H
Sbjct: 214 SMPGPSGMMAPN-SQSQQHSPQLTPQGSQQGSPVQMH 249


>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 288 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 392
           + KQI  E+ AS  YL+M  YF  D V  P  A +
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKF 50



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 PRLREXFFDAATEEREHATKLIDYLLMRG 460
           P + + F + + EEREHAT+L+    +RG
Sbjct: 45  PNIAKFFKEQSDEEREHATELMRVQNLRG 73


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
           protein ZK250.9 protein.
          Length = 1466

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 261 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 407
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -3

Query: 147 SYNHRFFDDIQKNMCS*KQ*LYKSSLY 67
           SYNHRFF  I K++ S K+ LYK+ ++
Sbjct: 99  SYNHRFF--IHKDISSDKKFLYKNDIF 123


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
           protein Y16E11A.2 protein.
          Length = 1466

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 261 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 407
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
           protein F59H6.5 protein.
          Length = 1486

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 261 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 407
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>Z82082-8|CAE53736.1|   83|Caenorhabditis elegans Hypothetical
           protein ZC334.11 protein.
          Length = 83

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 617 LKLLSQVLMTSRMLLVTSLSSLRACSRADAPLSHDVWRGPC 495
           L LL  +++T+   L  S ++ R C R   P  + +  GPC
Sbjct: 6   LILLCALVLTTMAFLAPSTAAKRRCGRRLIPYVYSICGGPC 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,886,887
Number of Sequences: 27780
Number of extensions: 246192
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)