Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0042
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.47 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 493 VQGPRHTSWESGASALEHALKLESDVTNSI 582
           ++ P   SW S  + +  A KL+ ++ NSI
Sbjct: 148 IRTPTEASWHSPEAHISVAQKLQKEIPNSI 177



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +2

Query: 347 LLLDRYGEPPRLREXFFDAATEEREHATKLIDYLLMRGKLTGSVTNL 487
           ++LD+Y  P      +   A E  +     IDYL+      G+++ +
Sbjct: 177 IILDQYTNPGNPLAHYDQTAIEIWKQCEGKIDYLVAGAGTGGTISGI 223


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 584 RMLLVTSLSSLRACSRADAPLSHDVWRG 501
           R+LL++++  +  CS  +  L  D++RG
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRG 37


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 4   ANRTYLFEFPANYKSPSTPVCVKA 75
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,326
Number of Sequences: 438
Number of extensions: 2610
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)