Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0041
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical pr... 30 1.3
L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 3.0
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 29 3.0
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 28 5.3
Z99280-1|CAB16499.1| 225|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC084153-7|AAK84593.1| 451|Caenorhabditis elegans Hypothetical ... 28 7.0
AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical ... 27 9.3
AC024801-4|AAF59648.4| 485|Caenorhabditis elegans Hypothetical ... 27 9.3
>L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical
protein ZC262.5 protein.
Length = 54
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 64 AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 177
AAG+ +SQI A V QCTK A K P +A L+T
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41
>L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical
protein R05D3.6 protein.
Length = 54
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 64 AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 177
AAG+ +SQI A V QCTK A K P +A L+T
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 363 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 458
++ DA N T +LID K+GD +A+ +A G
Sbjct: 66 NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 363 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 458
++ DA N T +LID K+GD +A+ +A G
Sbjct: 66 NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 363 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 458
++ DA N T +LID K+GD +A+ +A G
Sbjct: 66 NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 619 HSSRDFTIQEVISSTFAHFSTRLKLLADSTVGKLCFQFKKHV 494
H++ F + +++T + F +LKL + + K+ Q +KH+
Sbjct: 29 HANHVFLFEMDLNNTLSFFGKQLKLDTEEEISKVIDQIRKHL 70
>Z99280-1|CAB16499.1| 225|Caenorhabditis elegans Hypothetical
protein Y57G11B.5 protein.
Length = 225
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 34 MWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGL 201
M+K+++ + A +A S +T + AED P A R F C K +
Sbjct: 1 MFKSLVFSALLAYAVAAPMSSMTTAIDRIDQIFQAEDSTPACNAETRRFNACFKDI 56
>AC084153-7|AAK84593.1| 451|Caenorhabditis elegans Hypothetical
protein Y22D7AL.4 protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 151 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 249
PE E +RT G+ G++D+N + + A+PN
Sbjct: 64 PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96
>AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical
protein F32D1.2 protein.
Length = 54
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 64 AAGVLADDFSQITAVVTSQCTK---NNAEDKVPEVEAALRTFGN 186
AAG+ +SQI A +T +CTK A K PE + T+ N
Sbjct: 6 AAGLNYVRYSQIAAEITRKCTKQVGGKAAVKKPEATLKITTWEN 49
>AC024801-4|AAF59648.4| 485|Caenorhabditis elegans Hypothetical
protein Y50D7A.3a protein.
Length = 485
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 639 LRVSVWNTLRGISR-YRRSSHQLLRIFQQGSSYWRIPQWGSSVFNLKSM 496
L V ++ L G + Y R +LR+ QQG +R QW + K++
Sbjct: 226 LGVIMYTLLAGCAPFYHRKQLMMLRLIQQGKFEFRNEQWANITAEAKNL 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,552,483
Number of Sequences: 27780
Number of extensions: 315229
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -