Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0040
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 89 4e-19
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 33 0.040
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.6
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 26 4.6
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 6.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 6.1
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.1
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/58 (67%), Positives = 48/58 (82%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 429
RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 44 RDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101
Score = 60.1 bits (139), Expect = 3e-10
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = +3
Query: 498 TKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGANP 677
+K+ ++ G N V L+E KKA L DVDPIELV+FLPALC+KMGV +
Sbjct: 126 SKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKN-KA 184
Query: 678 AFGALVHRXT 707
G ++H+ T
Sbjct: 185 RLGTVIHQKT 194
Score = 33.1 bits (72), Expect = 0.040
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLF RP++F IGQ IQP
Sbjct: 24 NPLFVSRPRSFGIGQDIQP 42
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 33.1 bits (72), Expect = 0.040
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
+R G N TK + + + D +PIE++L LP LC V
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNV 75
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.1 bits (57), Expect = 2.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2
Query: 537 LCLCRIGWCWPLWWRLI 487
+C +GWCW W +I
Sbjct: 247 ICQSYLGWCWVFWINMI 263
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 267 QICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 386
Q+ A YP+ +S SAS S+P+ P T + S
Sbjct: 308 QLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 184 QENCESSLREEAKELCYWSGHSANRDLSRFVRWPKYIRIQRQKAVLQRRL 333
+E E SL+EE ++ C W H D+ + +++ R+ L RL
Sbjct: 115 KERLEVSLKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRL 164
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 310 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 411
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 537 LCLCRIGWC 511
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -1
Query: 316 QPSDAGCGYTWAI----LQIWTSHDWLNALTNSKVLWPLLEERIHNFLGL-NLFDH 164
Q ++ G W++ + IW H + WP LE+++ F L ++F++
Sbjct: 350 QSNEIGTNVLWSMTTSFINIWRIHPGTCCCVVLSIYWPYLEDKLLKFSDLGDIFEY 405
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 492 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 322
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,756
Number of Sequences: 5004
Number of extensions: 49442
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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